Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold136
Parameters: 2 7 7 80 10 50 1000
Length:  1085849

Tables:   1   2   3   4   

This is table  4  of  4  ( 399 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
997029--997070
22
1.9
22
95
0
75
35
2
33
28
1.70
997042--997100
30
2.0
30
96
0
109
35
0
35
28
1.58
997019--997121
52
2.0
52
94
0
179
35
1
32
30
1.69
997072--997121
22
2.3
22
96
0
91
38
0
34
28
1.57
998780--999732
489
1.9
489
94
0
1681
32
13
15
37
1.87
1000318--1000360
22
2.0
22
95
0
77
9
20
27
41
1.83
1000456--1000703
43
5.8
42
79
2
208
25
27
21
24
1.99
1000457--1000617
85
1.9
85
82
0
205
23
26
25
24
2.00
1000725--1000892
43
3.9
42
77
6
176
26
31
19
22
1.98
1000561--1000852
146
2.0
147
93
2
507
24
29
20
25
1.99
1000730--1000889
86
1.9
86
88
2
241
26
32
20
21
1.97
1016866--1016981
37
3.4
37
67
28
112
47
8
3
40
1.51
1016863--1017006
64
2.2
64
100
0
288
48
7
2
40
1.46
1018473--1018779
79
4.0
78
83
8
332
36
7
11
44
1.69
1018646--1018816
66
2.5
68
87
3
238
39
5
13
41
1.67
1025748--1025790
17
2.5
17
96
0
77
44
2
0
53
1.13
1027520--1027544
12
2.1
12
100
0
50
68
0
0
32
0.90
1027533--1027603
20
3.6
19
77
7
72
52
4
1
42
1.29
1027573--1027627
20
2.7
20
85
2
65
61
0
3
34
1.13
1027598--1027638
21
2.0
21
85
9
57
70
0
7
21
1.11
1031038--1031082
22
2.0
22
82
0
54
62
6
0
31
1.21
1033652--1033677
1
26.0
1
100
0
52
0
100
0
0
0.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1033865--1033927
27
2.2
29
81
10
69
58
0
3
38
1.14
1034121--1034178
26
2.2
26
81
6
64
32
1
0
65
1.03
1036144--1036173
7
4.3
7
100
0
60
60
13
13
13
1.60
1039376--1039428
21
2.5
21
81
0
61
32
7
32
28
1.85
1045154--1045185
17
1.9
17
93
6
57
37
0
3
59
1.13
1046061--1046090
15
2.0
15
100
0
60
53
13
0
33
1.40
1051271--1051462
48
4.0
48
95
0
348
27
28
13
30
1.94
1068188--1068277
44
2.1
44
87
2
137
26
26
24
22
2.00
1071330--1071397
33
2.2
30
80
12
75
41
10
5
42
1.63
1071904--1071941
18
2.1
18
90
0
58
42
10
26
21
1.85
1073782--1073831
22
2.3
21
83
10
57
52
0
26
22
1.48
1076168--1076196
3
9.7
3
100
0
58
68
0
0
31
0.89
1076655--1076680
13
2.0
13
100
0
52
76
7
0
15
0.99
1077801--1077916
44
2.7
44
81
6
121
27
26
18
27
1.98
1078133--1078639
128
4.0
128
90
1
791
24
25
19
31
1.98
1085257--1085461
42
4.9
41
82
7
243
30
19
24
25
1.98
1085257--1085461
85
2.4
84
90
4
306
30
19
24
25
1.98

Tables:   1   2   3   4

The End!