genome.fa.s2890.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold216
Parameters: 2 7 7 80 10 50 1000
Length:  960516

Tables:   1   2   3   4   

This is table  2  of  4  ( 379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292661--292789	63	2.0	63	100	0	258	31	13	22	32	1.93
292869--292899	13	2.4	13	94	0	53	38	12	9	38	1.77
293792--293827	17	2.1	17	89	5	54	19	2	11	66	1.35
294731--294818	45	2.0	44	88	6	133	36	29	3	30	1.74
294801--294839	16	2.4	16	95	0	69	25	28	7	38	1.83
295029--295085	28	2.0	28	96	0	105	43	10	15	29	1.80
302116--302163	14	3.8	13	84	15	66	8	18	0	72	1.08
305688--306081	43	9.3	43	83	5	464	32	24	17	25	1.97
305688--306081	168	2.3	168	84	3	470	32	24	17	25	1.97
309022--309090	34	2.0	34	100	0	138	49	5	5	39	1.51
310693--310735	20	2.2	20	86	0	59	48	16	9	25	1.75
312193--312503	7	43.7	7	71	11	78	44	31	1	22	1.61
312234--312508	14	19.4	14	73	11	121	46	30	0	22	1.57
312257--312398	22	6.6	22	74	16	93	45	33	0	21	1.52
312301--312462	72	2.2	72	94	1	279	46	29	0	23	1.57
312243--312508	29	9.4	28	70	12	98	45	30	0	22	1.58
312812--312916	40	2.6	39	81	14	124	23	22	24	28	1.99
312964--313085	40	3.1	40	83	3	131	24	24	24	26	2.00
321337--321493	77	2.0	78	98	1	307	40	7	3	48	1.50
323164--323244	31	2.7	28	79	11	90	49	9	4	35	1.58
325424--325459	14	2.6	14	86	0	54	72	0	8	19	1.10
325589--325633	23	2.0	23	86	8	65	62	13	0	24	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328061--328233	44	3.9	44	65	13	104	28	24	19	27	1.98
328061--328302	132	1.8	132	97	0	457	28	23	19	28	1.98
329526--329571	23	2.0	24	86	4	67	13	21	0	65	1.26
330050--330133	9	8.5	10	77	13	61	0	11	7	80	0.88
330049--330145	9	10.7	9	78	19	53	0	11	6	82	0.83
330048--330148	25	4.0	25	79	17	88	0	10	7	81	0.88
330049--330147	17	5.8	16	78	10	81	0	11	6	82	0.82
334520--334550	16	1.9	16	93	0	53	48	0	3	48	1.17
334570--334603	3	11.7	3	87	6	52	64	0	0	35	0.94
338478--338586	3	35.3	3	77	9	69	28	6	2	62	1.34
343836--344082	50	4.9	50	67	5	149	27	21	24	27	1.99
343846--344078	100	2.3	101	88	1	344	27	21	22	27	1.99
343846--344112	100	2.7	98	82	5	313	26	22	24	26	2.00
344485--345010	129	4.1	129	90	1	718	30	20	20	28	1.98
344487--344985	44	11.5	43	68	10	214	30	20	20	28	1.98
346425--346466	3	14.0	3	94	0	75	30	0	2	66	1.04
351457--351489	15	2.1	17	88	11	52	45	3	0	51	1.16
352083--352126	20	2.3	20	81	18	58	72	2	0	25	0.96
353773--353813	21	2.0	21	95	0	73	46	2	9	41	1.50
363226--363259	17	2.0	17	88	11	52	64	0	2	32	1.08
365519--365570	22	2.4	22	83	6	70	36	0	3	59	1.16
365519--365566	12	4.2	12	80	15	50	31	0	4	64	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365519--365568	11	4.5	11	81	16	59	34	0	4	62	1.14
378266--378317	28	1.9	26	92	7	86	46	0	7	46	1.31
379946--380037	41	2.2	41	84	0	112	23	19	23	32	1.97
382710--383227	44	11.7	44	77	6	393	33	17	19	29	1.95
382969--383229	136	1.9	136	86	1	371	32	18	20	27	1.96
384650--384695	18	2.5	18	80	20	51	45	15	8	30	1.76
385719--385835	57	2.1	57	98	0	225	44	3	36	15	1.63
386294--386324	15	2.1	15	93	0	53	9	6	0	83	0.79
386750--387097	174	2.0	174	100	0	696	16	21	15	46	1.84
387420--387494	33	2.2	34	80	13	84	22	4	2	70	1.16
396269--396316	25	1.9	25	84	16	64	60	2	8	29	1.37
399965--400351	71	5.5	69	81	3	369	21	17	24	37	1.93
399965--400351	142	2.7	141	81	1	425	21	17	24	37	1.93
405889--405993	51	2.1	51	96	0	192	33	26	11	28	1.91
406163--406233	33	2.2	33	85	7	92	25	46	1	26	1.61
407190--407221	17	1.9	16	93	6	55	21	3	31	43	1.68
413495--413556	22	2.8	22	85	0	88	20	29	11	38	1.88
414624--414818	27	7.2	27	87	6	263	41	19	18	20	1.91
414624--414815	81	2.4	81	91	1	305	42	19	18	20	1.90
417793--417841	19	2.5	20	80	3	55	24	2	4	69	1.17
421079--421135	29	1.9	30	85	3	80	17	29	33	19	1.95
422046--422097	12	4.4	12	80	11	54	17	9	3	69	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422037--422104	28	2.4	30	81	16	83	17	8	2	70	1.25
423669--423755	6	14.3	6	81	9	70	9	5	4	80	1.01
423669--423751	27	3.1	27	78	15	84	9	6	4	79	1.04
428020--428078	21	2.8	21	76	5	66	30	23	27	18	1.98
428658--428706	25	2.0	25	87	0	71	16	34	28	20	1.94
448500--448528	12	2.3	13	94	5	51	20	6	6	65	1.40
454927--454962	19	1.9	19	88	5	56	41	8	2	47	1.48
467904--467949	21	2.3	21	81	7	60	47	15	6	30	1.70
468599--468632	11	2.9	12	91	8	61	44	0	8	47	1.34
472168--472444	27	10.3	27	88	1	369	16	15	23	44	1.85
472168--472444	80	3.5	80	86	2	396	16	15	23	44	1.85
472168--472449	107	2.6	107	87	2	406	17	15	22	45	1.85
515690--515748	28	2.1	28	100	0	118	25	20	25	28	1.99
522020--522058	17	2.3	17	100	0	78	30	12	25	30	1.93
522952--523029	29	2.8	29	75	7	72	24	30	26	17	1.97
523918--523983	28	2.4	29	82	14	86	19	7	0	72	1.08
523892--523962	16	4.4	15	82	12	72	23	5	0	70	1.08
523891--523966	6	14.4	5	76	23	52	22	5	0	72	1.04
525591--525650	19	3.2	20	81	13	65	11	3	5	80	1.00
525603--525683	6	12.7	6	77	14	65	9	3	6	80	1.01
530351--530535	93	2.0	93	97	0	352	39	18	8	32	1.82
552305--552379	37	2.0	37	100	0	150	29	5	18	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558338--558379	22	2.0	21	90	4	66	57	14	0	28	1.38
568702--568741	21	1.9	21	84	0	53	20	32	5	42	1.73
568784--568823	15	2.7	15	88	0	62	0	20	0	80	0.72
568774--568848	12	6.7	11	72	21	50	8	20	0	72	1.10
570248--570289	17	2.4	18	81	18	54	28	7	2	61	1.35
571689--571730	22	2.0	21	85	4	57	54	11	2	30	1.49
574554--574580	10	2.7	10	100	0	54	77	7	0	14	0.97
574615--574662	3	16.3	3	95	4	89	33	0	0	66	0.92
575712--575757	20	2.2	22	81	18	62	73	0	21	4	1.00
575714--575757	21	2.1	21	88	12	65	75	0	20	4	0.98
575722--575793	17	4.2	17	72	19	60	72	2	18	6	1.20
575761--575796	18	2.0	18	88	0	54	69	5	16	8	1.33
575712--575812	30	3.4	30	74	8	82	70	1	20	6	1.21
575826--575859	18	1.9	18	88	5	52	55	0	20	23	1.43
575823--575881	29	2.1	28	81	9	66	61	0	20	18	1.35
577589--577627	10	3.7	11	86	10	55	30	25	12	30	1.93
577589--577627	21	1.9	20	89	5	60	30	25	12	30	1.93
577589--577633	20	2.2	20	84	7	56	28	26	15	28	1.96
579542--579628	36	2.4	37	86	3	113	28	39	16	16	1.89
581353--581415	21	3.0	21	88	2	90	30	3	33	33	1.74
582315--582373	30	2.0	30	83	6	75	28	15	25	30	1.96
583858--583896	18	2.2	18	95	0	69	46	2	5	46	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583998--584027	8	3.8	8	90	0	51	23	3	0	73	0.98
586114--586184	30	2.4	30	100	0	142	39	9	12	38	1.77
605988--606222	117	2.0	118	80	5	269	32	15	19	32	1.93
606576--606614	19	2.1	19	100	0	78	33	10	10	46	1.72
609674--609735	30	2.1	30	100	0	124	46	27	6	19	1.74
614578--614616	18	2.2	18	86	4	53	17	25	25	30	1.97
615921--615973	22	2.3	23	80	3	63	33	7	0	58	1.26
617349--617386	19	2.0	20	94	5	69	47	0	0	52	1.00
622029--622234	42	4.9	41	81	7	198	30	25	14	30	1.94
622029--622227	43	4.7	42	84	2	238	30	25	14	30	1.95

Tables:   1   2   3   4