genome.fa.s3047.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold333
Parameters: 2 7 7 80 10 50 1000
Length:  1398653

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 563 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287923--287957	11	3.2	11	91	0	52	54	0	5	40	1.24
289312--289345	17	2.0	17	94	0	59	52	2	11	32	1.53
290252--290293	21	2.0	21	85	0	57	30	7	19	42	1.78
298776--298839	32	2.0	32	96	0	119	17	21	20	40	1.91
305280--305328	21	2.3	21	89	0	71	26	28	20	24	1.99
305384--305436	22	2.4	22	84	6	63	26	16	24	32	1.97
305697--306144	222	2.0	222	96	0	815	35	12	21	30	1.90
306411--306553	29	5.0	29	79	0	144	38	19	25	16	1.92
311248--311302	25	2.2	25	86	3	74	21	3	3	70	1.18
314631--314681	7	7.3	7	86	0	75	43	27	0	29	1.55
316199--316297	29	3.4	29	81	2	128	39	22	25	13	1.90
331182--331246	32	2.1	32	94	2	114	32	9	10	47	1.70
332607--332654	24	2.0	24	95	0	87	37	2	12	47	1.53
337919--337974	24	2.3	24	81	0	67	51	8	7	32	1.60
346570--346595	13	2.0	13	100	0	52	15	0	0	84	0.62
346567--346608	21	2.0	21	85	0	57	16	2	2	78	0.96
360419--360464	20	2.5	19	77	22	53	28	4	2	65	1.23
363531--363663	55	2.4	55	84	2	169	29	8	14	48	1.73
368072--368386	161	2.0	161	98	0	612	30	12	11	45	1.76
373305--373340	15	2.4	15	95	0	63	61	2	8	27	1.39
377086--377153	24	2.8	25	79	16	79	13	27	20	38	1.90
377086--377153	25	2.8	23	82	8	82	13	27	20	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377136--377192	25	2.3	25	84	0	78	21	26	22	29	1.99
378820--378959	39	3.6	39	88	1	210	30	2	20	46	1.65
384072--384208	55	2.5	55	85	2	168	24	10	13	51	1.73
384194--384350	61	2.6	60	86	6	208	21	10	17	50	1.76
384320--384404	34	2.3	36	84	15	104	21	10	17	50	1.76
384255--384459	95	2.2	95	92	0	338	21	9	17	51	1.74
384391--384514	55	2.3	55	88	0	176	26	8	14	50	1.70
384079--384635	156	3.7	150	85	4	722	23	9	15	51	1.72
386733--386868	39	3.5	39	82	6	152	45	19	4	30	1.70
387530--387846	170	1.9	170	98	0	616	40	23	7	28	1.81
389654--389686	16	2.1	16	94	0	57	36	21	3	39	1.69
389817--389859	20	2.2	20	91	8	70	20	25	2	51	1.60
394604--394633	3	10.0	3	92	0	51	63	0	3	33	1.11
398372--398411	19	2.1	19	90	0	62	42	12	20	25	1.86
404805--405214	205	2.0	205	100	0	820	27	16	23	32	1.96
423276--423422	25	5.9	24	66	17	68	21	23	21	34	1.97
423319--423478	73	2.2	73	77	6	171	21	25	20	33	1.97
426499--426549	3	17.0	3	95	0	93	33	1	0	64	1.05
426791--426824	16	2.1	16	88	0	50	38	2	14	44	1.61
431672--431706	7	5.0	7	86	13	54	68	0	17	14	1.21
437995--438028	16	2.1	16	88	0	50	38	2	14	44	1.61
441857--441896	7	5.9	7	86	13	57	72	0	15	12	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443133--443268	45	3.1	44	72	4	130	30	27	23	19	1.98
443253--443499	132	1.9	132	90	1	397	29	17	24	28	1.98
443305--443725	227	1.9	227	88	2	639	30	18	22	28	1.97
443532--443814	125	2.2	129	84	10	384	28	19	22	28	1.98
450077--450211	71	1.9	71	90	0	216	24	13	27	34	1.93
450477--450685	107	2.0	107	89	3	323	38	7	14	38	1.75
452588--452737	74	2.0	74	86	0	210	32	14	29	23	1.94
468589--468639	21	2.4	22	80	9	70	33	25	21	19	1.97
469095--469130	18	2.1	18	89	5	56	33	25	0	41	1.55
469599--469644	3	15.7	3	78	13	51	58	2	0	39	1.10
469599--469645	13	3.7	13	82	2	60	57	2	0	40	1.11
471679--471738	24	2.6	24	84	5	70	28	10	21	40	1.85
471843--471933	24	3.8	24	77	8	76	36	10	14	38	1.81
471968--472122	46	3.3	47	75	8	156	33	12	16	36	1.87
471949--472133	46	4.0	47	72	11	148	33	12	17	36	1.88
472358--472772	54	7.9	54	74	8	316	38	13	20	26	1.90
477118--477191	31	2.4	31	81	6	87	43	17	12	27	1.84
478481--478521	22	1.9	21	85	5	55	70	0	12	17	1.16
478812--478843	13	2.5	13	94	0	55	15	34	0	50	1.45
485667--485710	19	2.3	19	88	7	63	45	0	4	50	1.22
486574--486617	19	2.3	19	92	7	72	47	0	0	52	1.00
486632--486676	19	2.4	18	82	7	63	42	0	6	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488478--488546	30	2.3	31	85	12	90	44	20	10	24	1.82
490290--490416	21	6.0	21	82	5	105	14	21	17	46	1.84
500379--500413	2	18.0	2	88	5	54	45	0	0	54	0.99
507794--507844	24	2.1	24	85	7	68	29	0	1	68	1.00
509138--509234	42	2.3	42	96	0	176	20	30	29	18	1.97
510362--510437	33	2.3	34	81	4	84	26	23	17	32	1.96
510949--510989	19	2.1	20	95	4	75	46	12	9	31	1.74
510998--511032	12	2.9	12	100	0	70	42	17	5	34	1.73
511153--511211	21	2.8	21	79	5	66	52	15	18	13	1.74
515989--516509	127	4.2	126	81	6	619	28	14	16	39	1.88
516669--516746	28	2.9	28	88	3	115	34	21	1	42	1.61
522483--522569	11	7.9	11	75	8	79	2	6	32	58	1.37
522529--522586	22	2.6	22	83	5	64	3	6	29	60	1.39
523100--523130	3	10.3	3	92	0	53	35	3	32	29	1.73
524873--524938	29	2.2	30	81	5	80	36	0	1	62	1.05
524884--524943	20	3.0	20	76	13	70	31	0	1	66	1.01
524873--524938	10	6.6	10	75	13	55	36	0	1	62	1.05
524961--524986	7	3.7	7	100	0	52	38	0	0	61	0.96
526582--526620	2	19.5	2	100	0	78	51	0	0	48	1.00
533752--533804	15	3.5	15	85	7	72	66	0	0	33	0.92
533748--533802	16	3.6	16	82	7	69	69	0	0	30	0.89
533896--533926	16	1.9	16	100	0	62	38	35	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536579--536655	14	5.0	15	71	20	52	45	15	6	32	1.72
536583--536649	34	1.9	35	87	3	100	49	13	5	31	1.66
538258--538284	14	1.9	14	100	0	54	48	0	37	14	1.45
538580--538604	11	2.3	11	100	0	50	24	0	0	76	0.80
539002--539100	41	2.4	42	83	5	121	15	25	17	42	1.88
539464--539531	35	1.9	37	85	8	97	35	4	1	58	1.27
555536--555583	17	2.9	17	84	3	53	54	8	10	27	1.63
566128--566217	45	2.0	45	97	0	171	43	22	8	25	1.82
566485--566552	25	2.7	25	76	0	82	33	20	16	29	1.94
577052--577137	4	21.5	4	80	17	99	54	0	1	44	1.07
577051--577138	13	7.2	13	80	18	109	55	0	1	43	1.07
577035--577138	9	12.3	9	79	18	93	55	0	1	42	1.10
578993--579022	13	2.3	13	94	0	51	50	0	3	46	1.18
584779--584814	19	1.9	18	88	5	54	33	0	5	61	1.19
588254--588330	33	2.3	33	84	0	100	44	11	19	24	1.84
590490--590536	21	2.2	21	88	0	67	21	27	25	25	1.99
594075--594115	21	2.0	21	85	0	55	46	0	9	43	1.36
598129--598171	23	1.9	23	90	4	70	44	11	4	39	1.62
613879--613953	26	2.9	26	80	6	98	22	24	21	32	1.98
619165--619194	15	2.0	15	100	0	60	20	0	0	80	0.72
631481--631603	61	2.0	62	83	1	158	43	11	17	27	1.83
647244--647297	27	2.0	27	100	0	108	29	14	11	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647382--647471	44	2.0	44	86	0	126	37	10	2	50	1.48
671985--672036	23	2.3	23	89	0	77	42	23	7	26	1.81
675182--675228	24	1.9	25	83	12	62	44	2	10	42	1.51
676352--676434	30	2.8	30	83	0	94	34	22	15	26	1.94
685194--685245	25	2.1	25	100	0	104	19	0	51	28	1.47
695585--695627	18	2.4	18	88	0	59	18	27	9	44	1.80
695868--695915	21	2.3	21	82	7	62	31	41	20	6	1.77
695883--695929	21	2.2	21	85	7	60	27	42	25	4	1.73
696560--696852	96	3.1	94	83	4	347	41	18	2	36	1.65
698293--698333	22	1.9	21	85	5	55	58	4	2	34	1.32

Tables:   1   2   3   4   5