genome.fa.s3047.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold333
Parameters: 2 7 7 80 10 50 1000
Length:  1398653

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 563 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1179343--1179639	147	2.0	147	95	0	531	20	14	15	49	1.79
1180396--1180425	1	30.0	1	100	0	60	0	0	0	100	0.00
1181788--1181815	13	2.2	13	100	0	56	46	0	0	53	1.00
1192324--1192421	50	1.9	51	89	2	153	23	24	32	19	1.97
1192379--1192574	99	2.0	99	94	0	347	27	21	22	28	1.99
1206434--1206459	3	8.7	3	100	0	52	69	0	30	0	0.89
1207775--1207818	23	2.0	23	86	4	63	54	0	4	40	1.21
1207924--1208003	39	2.1	39	83	9	101	41	1	3	53	1.27
1209678--1209702	2	12.5	2	100	0	50	48	0	0	52	1.00
1211054--1211096	18	2.5	17	85	10	61	30	2	0	67	1.03
1211054--1211101	17	2.7	19	78	15	59	29	2	0	68	1.01
1212389--1212432	18	2.6	17	86	10	63	22	29	25	22	1.99
1215534--1215910	124	3.0	124	89	2	533	29	15	21	33	1.94
1219185--1219835	23	29.6	23	77	14	585	28	0	23	48	1.55
1219264--1219321	28	2.1	28	90	0	89	25	0	25	48	1.52
1219187--1219977	150	5.2	147	82	11	751	28	0	23	47	1.55
1219450--1219639	18	9.2	18	75	17	92	31	0	20	47	1.54
1219824--1219854	14	2.1	15	94	5	55	29	0	19	51	1.47
1219753--1219919	44	4.1	38	75	17	142	26	0	23	48	1.55
1219853--1219895	18	2.4	18	84	11	61	30	0	18	51	1.47
1219872--1219976	23	4.7	23	75	18	114	29	0	23	46	1.53
1219909--1219971	18	3.2	18	68	20	54	30	0	22	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1219295--1219976	65	10.6	63	79	11	528	28	0	23	47	1.54
1219727--1220018	145	2.0	143	81	7	331	30	1	22	45	1.61
1220007--1220042	17	2.1	16	90	10	54	61	8	2	27	1.39
1220007--1220043	18	2.1	17	90	5	56	62	8	2	27	1.37
1220497--1220536	18	2.2	18	95	0	71	40	7	30	22	1.81
1222356--1222470	50	2.3	51	93	4	198	44	0	26	28	1.60
1222394--1222488	22	4.0	22	68	21	59	42	0	28	29	1.56
1222356--1222478	51	2.4	50	92	6	196	43	0	26	29	1.60
1222458--1222504	11	4.2	11	86	2	67	42	0	38	19	1.51
1225235--1225288	25	2.2	25	96	0	99	0	27	25	46	1.53
1225889--1225939	13	3.9	13	77	10	59	37	25	5	31	1.80
1247939--1248150	105	2.0	105	83	3	266	27	25	16	31	1.96
1249697--1249755	30	2.0	30	100	0	118	32	27	16	23	1.96
1252238--1252356	55	2.2	55	100	0	238	44	7	5	42	1.54
1254723--1254786	23	2.8	23	73	0	65	31	17	29	21	1.96
1267440--1267530	45	2.0	44	89	2	137	31	2	7	58	1.39
1269535--1269566	16	2.0	16	100	0	64	31	6	25	37	1.81
1272714--1273400	343	2.0	344	99	0	1367	30	32	10	26	1.90
1278474--1278500	12	2.2	12	100	0	54	22	0	0	77	0.76
1279074--1279107	2	17.5	2	93	6	61	47	0	0	52	1.00
1287154--1287540	195	2.0	194	84	5	505	29	18	16	35	1.93
1291662--1291688	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1295266--1295596	164	2.0	165	99	0	655	48	4	7	39	1.52
1305610--1305644	1	35.0	1	100	0	70	100	0	0	0	0.00
1310607--1310635	13	2.2	13	100	0	58	13	0	0	86	0.58
1312601--1312642	22	1.9	22	95	0	75	57	0	0	42	0.99
1313166--1313207	22	1.9	22	95	0	75	57	0	0	42	0.99
1322192--1322225	6	5.7	6	89	0	50	17	0	14	67	1.23
1326029--1326065	19	1.9	19	88	0	56	27	2	8	62	1.37
1326154--1326196	2	21.5	2	90	0	68	44	4	0	51	1.22
1326660--1327041	189	2.0	191	86	3	529	29	18	16	36	1.92
1329504--1329585	25	3.3	25	82	0	92	34	18	24	23	1.96
1331215--1331296	6	13.7	6	78	0	74	21	17	12	48	1.79
1336517--1336565	25	2.0	25	84	7	66	61	0	14	24	1.33
1338352--1338386	17	2.1	17	100	0	70	28	5	34	31	1.81
1349088--1349300	105	2.0	104	80	5	232	29	27	14	28	1.95
1349569--1349614	8	5.6	8	84	5	56	80	0	19	0	0.71
1349569--1349610	13	3.3	13	83	3	59	80	0	19	0	0.70
1352810--1352858	24	2.0	25	84	7	66	59	2	16	22	1.47
1363677--1363732	22	2.5	23	83	11	71	62	3	0	33	1.12
1363692--1363730	18	2.2	18	85	0	51	58	5	0	35	1.20
1364268--1364326	10	5.8	10	79	18	59	77	3	8	10	1.08
1365302--1365904	132	4.6	132	93	0	936	27	24	18	28	1.98
1376665--1376895	30	7.7	30	81	4	288	50	1	9	38	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1376665--1376895	88	2.6	91	89	4	362	50	1	9	38	1.43
1376669--1376899	59	3.9	59	80	6	245	50	1	9	38	1.44
1377313--1377367	21	2.6	21	88	0	83	30	36	9	23	1.86
1378565--1378643	36	2.2	36	82	11	90	46	10	1	41	1.45
1379784--1379999	105	2.1	105	80	1	236	28	26	13	31	1.94
1381481--1381534	19	2.9	19	89	8	76	53	9	0	37	1.33
1389592--1389641	5	10.0	5	78	8	57	54	2	0	44	1.11
1389592--1389643	16	3.4	16	82	12	65	53	1	0	44	1.11
1389550--1389641	35	2.6	36	80	8	93	53	2	1	43	1.20
1390357--1390396	6	6.5	6	97	2	71	67	0	32	0	0.91
1391916--1391953	19	2.0	19	89	0	58	52	2	18	26	1.58
1392485--1392641	18	8.8	17	76	14	147	33	13	9	43	1.76
1392485--1392696	36	5.8	35	75	12	178	33	12	10	43	1.77
1392606--1392682	41	1.9	40	84	10	104	37	10	10	41	1.74
1393765--1393815	21	2.5	19	74	22	50	68	0	23	7	1.15
1394910--1395270	105	3.4	105	95	0	650	28	26	14	30	1.95
1397081--1397117	18	2.1	18	100	0	74	35	5	5	54	1.47

Tables:   1   2   3   4   5

The End!