genome.fa.s4147.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold222
Parameters: 2 7 7 80 10 50 1000
Length:  1154749

Tables:   1   2   3   4   

This is table  2  of  4  ( 430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306294--306432	44	3.2	44	73	5	120	32	16	23	28	1.96
307790--307819	15	2.0	15	93	0	51	10	0	6	83	0.81
315128--315172	23	1.9	24	86	4	65	20	2	51	26	1.59
318599--318696	42	2.3	42	83	0	124	27	15	19	37	1.92
319590--319706	56	2.1	56	98	0	225	31	14	11	41	1.82
324642--324741	51	2.0	51	86	4	139	26	26	3	45	1.68
327903--327977	24	3.1	24	70	0	78	33	12	18	36	1.88
327864--327997	48	2.8	48	83	0	169	34	10	17	38	1.84
333665--333693	13	2.2	13	100	0	58	27	17	27	27	1.97
334660--334708	20	2.7	18	77	22	57	51	4	2	42	1.32
335703--335767	21	3.1	21	71	8	69	33	24	20	21	1.97
336216--336251	18	2.1	18	89	5	56	33	25	0	41	1.55
337250--337319	28	2.3	32	78	14	85	48	5	1	44	1.35
337417--337472	13	4.5	12	74	14	51	51	3	0	44	1.18
343053--343104	20	2.6	20	93	0	95	21	26	0	51	1.47
346467--346541	37	2.0	38	97	2	143	32	16	26	25	1.96
363530--363555	12	2.2	12	100	0	52	42	7	23	26	1.81
371111--371162	25	2.1	24	85	3	68	17	21	23	38	1.93
376567--376650	25	3.4	25	84	0	114	33	21	21	23	1.97
376581--376687	25	4.3	25	82	0	115	36	17	22	23	1.95
376568--376675	50	2.2	50	82	0	126	33	21	21	24	1.97
380408--380473	26	2.6	25	80	7	78	36	21	24	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380921--380960	21	1.9	21	90	10	64	45	12	0	42	1.42
380930--380971	21	2.0	21	85	0	57	40	19	2	38	1.64
381105--381158	28	1.9	29	85	7	76	37	14	5	42	1.69
386164--386228	25	2.6	25	82	2	76	33	13	26	26	1.94
388016--388040	12	2.1	12	100	0	50	52	32	0	16	1.44
389906--389940	18	1.9	18	100	0	70	51	25	11	11	1.71
393870--393922	20	2.7	20	82	2	63	39	16	28	15	1.89
393908--393971	20	3.2	20	76	8	76	37	15	31	15	1.89
393894--394018	40	3.1	40	87	0	178	38	16	28	16	1.90
396009--396042	10	3.5	10	88	4	52	8	23	0	67	1.18
397674--397764	45	2.0	45	97	2	175	32	31	10	24	1.90
397809--397855	16	2.9	16	72	12	51	42	12	0	44	1.42
398557--398663	33	3.5	33	70	23	115	37	12	29	20	1.89
398643--398682	20	2.0	20	90	0	62	52	12	22	12	1.72
404170--404226	27	2.1	27	96	0	105	40	15	17	26	1.90
408006--408039	16	2.1	16	88	0	50	41	2	20	35	1.68
409284--409380	48	2.0	48	97	0	185	26	21	8	43	1.81
417206--417237	15	2.1	15	94	0	55	28	6	3	62	1.34
427807--428036	43	5.3	43	86	3	320	30	33	16	19	1.94
428297--428387	43	2.1	43	87	2	130	43	9	10	35	1.73
432644--432703	10	5.7	11	75	18	56	46	5	0	48	1.24
432637--432711	29	2.5	29	81	12	82	48	5	1	45	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432637--432709	30	2.4	30	82	8	87	49	4	1	45	1.29
432644--432706	20	3.1	20	77	11	74	44	4	0	50	1.23
433103--433167	27	2.4	27	80	10	78	41	43	3	12	1.58
434276--434463	41	4.6	41	92	0	286	30	25	23	20	1.98
434522--434666	40	3.6	40	78	9	145	20	19	22	37	1.94
444784--444823	20	2.0	21	90	5	64	22	27	15	35	1.94
447389--447430	20	2.0	21	90	4	68	23	28	16	30	1.96
451062--451105	20	2.2	20	91	0	70	68	2	18	11	1.30
451100--451144	22	2.0	23	83	8	58	66	2	26	4	1.22
451856--452025	42	4.0	42	100	0	340	28	16	11	42	1.83
452408--452449	20	2.0	21	90	4	68	23	28	16	30	1.96
456252--456305	27	2.0	27	100	0	108	29	18	14	37	1.91
468237--468270	17	2.0	17	88	0	50	47	11	29	11	1.76
470309--470333	13	1.9	13	100	0	50	36	0	16	48	1.46
474761--474818	28	2.1	28	96	0	107	58	22	13	5	1.55
476367--476406	6	6.7	6	97	0	71	0	17	12	70	1.18
477065--477119	29	1.9	29	85	10	78	61	3	3	30	1.30
477704--477730	6	4.5	6	100	0	54	33	0	0	66	0.92
478158--478237	30	2.7	30	76	14	76	45	1	2	51	1.22
478647--478690	23	1.9	23	90	0	70	47	0	6	45	1.29
478778--478815	17	2.2	17	90	0	58	36	2	5	55	1.37
485612--485673	27	2.3	27	75	10	63	33	17	19	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485801--485925	35	3.6	35	81	6	146	35	33	12	19	1.88
488223--488277	25	2.2	25	83	3	65	63	5	1	29	1.27
488290--488345	11	5.1	11	76	8	51	42	0	35	21	1.53
492724--492966	116	2.1	116	89	2	373	45	5	8	40	1.58
492961--493881	23	41.4	23	80	7	849	27	0	25	46	1.59
492971--493881	67	13.7	67	83	6	982	27	0	25	46	1.59
492961--493881	177	5.2	176	87	5	1078	27	0	25	46	1.59
494658--494705	25	1.9	25	95	0	87	39	16	0	43	1.48
494704--494744	9	4.8	9	88	8	59	58	9	0	31	1.31
494704--494744	17	2.4	18	88	8	59	58	9	0	31	1.31
494652--494811	85	1.9	85	97	0	302	47	13	0	39	1.42
495219--495258	18	2.2	18	95	0	71	40	7	30	22	1.81
495893--495917	7	3.6	7	100	0	50	60	12	0	28	1.32
496088--496125	20	1.9	20	84	10	51	55	7	2	34	1.43
496917--496959	11	3.8	12	81	6	54	58	0	0	41	0.98
498994--499078	38	2.2	38	83	4	109	63	3	0	32	1.11
499299--499330	9	3.6	9	100	0	64	40	0	0	59	0.97
499303--499362	23	2.9	21	85	11	72	43	3	0	53	1.17
499621--499744	61	2.0	61	89	3	187	37	9	9	42	1.71
499958--500020	9	7.8	8	77	19	60	71	0	0	28	0.86
499959--500023	8	7.6	9	78	13	57	72	0	0	27	0.85
499959--500023	19	3.8	18	73	13	57	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499945--500044	35	2.8	36	82	8	107	64	2	0	34	1.05
499991--500020	14	2.1	15	93	6	53	70	0	0	30	0.88
499958--500040	43	1.9	42	83	13	107	67	1	0	31	0.98
500048--500579	260	2.0	262	98	1	1041	36	10	8	44	1.69
505516--505542	12	2.2	12	100	0	54	40	11	25	22	1.87
507224--507345	59	2.1	59	96	0	226	37	21	13	27	1.90
534356--534424	16	4.2	16	96	3	129	24	0	37	37	1.56
534356--534424	33	2.1	32	97	2	129	24	0	37	37	1.56
534405--534495	45	2.0	45	85	2	121	27	6	28	37	1.82
542385--542410	13	2.0	13	100	0	52	61	7	30	0	1.24
544217--544259	13	3.0	15	73	13	54	51	18	4	25	1.66
544973--545157	99	1.9	99	91	0	307	45	15	14	24	1.83
544973--545157	48	3.8	48	85	7	246	45	15	14	24	1.83
547466--547506	19	2.2	19	100	0	82	41	24	7	26	1.81
552857--553099	48	5.0	47	81	8	222	45	15	13	26	1.82
552893--552968	23	3.2	23	67	20	66	47	14	10	27	1.77
552872--553099	98	2.4	96	82	8	282	46	15	13	25	1.82
552992--553084	27	3.7	26	67	20	63	47	12	11	27	1.77
553679--553764	42	2.0	43	81	2	102	34	24	15	25	1.94
565132--565265	27	5.0	27	85	3	155	38	21	19	20	1.93
565132--565256	54	2.3	54	83	8	173	40	20	20	19	1.92
565398--565478	26	3.1	26	83	0	108	20	19	20	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565612--565679	33	2.0	34	85	2	93	22	25	26	26	2.00
579034--579174	70	2.0	70	98	0	273	31	19	22	26	1.97
580711--580807	29	3.4	28	88	5	124	37	17	24	20	1.94
580709--580826	58	2.0	59	83	8	152	37	14	26	22	1.92
580741--580829	29	3.0	29	90	1	115	34	14	28	22	1.93
582481--582530	26	1.9	26	84	8	66	30	10	22	38	1.86
590566--590617	22	2.4	22	80	0	59	44	19	19	17	1.87
590622--590808	32	5.8	31	80	6	169	37	18	20	23	1.94
590609--590808	64	3.1	63	77	5	206	38	18	20	23	1.94
590806--590860	26	2.3	23	71	17	56	38	27	18	16	1.92

Tables:   1   2   3   4