genome.fa.s4147.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold222
Parameters: 2 7 7 80 10 50 1000
Length:  1154749

Tables:   1   2   3   4   

This is table  4  of  4  ( 430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958232--958322	20	4.6	20	77	10	80	30	19	27	21	1.98
958205--958336	60	2.2	60	82	2	149	34	20	24	21	1.97
963262--963317	28	2.0	28	96	0	103	41	16	25	17	1.89
964992--965092	44	2.4	42	82	14	120	32	28	5	32	1.81
965078--965114	16	2.3	16	90	0	65	18	35	8	37	1.81
971415--971471	3	19.3	3	96	3	107	68	0	0	31	0.90
979169--979221	25	2.1	25	85	0	70	20	32	16	30	1.95
979593--979642	20	2.4	21	86	3	75	26	2	2	70	1.09
981744--981829	41	2.1	42	86	2	120	13	32	30	23	1.93
994962--995205	121	2.0	122	97	2	465	43	5	4	46	1.46
997919--997958	16	2.5	16	91	0	71	27	32	5	35	1.79
1008174--1008313	40	3.5	39	79	6	147	37	22	20	20	1.94
1008346--1008521	41	4.3	40	83	6	203	21	24	25	28	1.99
1008346--1008526	81	2.2	82	82	7	226	20	23	24	30	1.99
1008346--1008539	40	4.8	41	77	12	188	22	23	25	28	1.99
1013377--1013610	42	5.5	42	88	4	319	19	18	28	33	1.96
1017848--1017948	31	3.3	31	84	0	130	29	18	4	46	1.70
1020885--1020914	7	4.1	7	95	4	51	56	0	0	43	0.99
1029938--1030052	7	16.7	7	67	15	53	33	24	11	30	1.90
1037511--1037547	20	1.9	18	89	10	56	75	5	5	13	1.15
1038861--1038903	11	3.7	11	79	11	50	39	2	0	58	1.11
1039627--1039660	6	5.7	6	100	0	68	32	0	67	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1046206--1046241	9	4.0	9	92	0	63	30	11	13	44	1.79
1046294--1046324	9	3.4	9	90	0	53	38	22	12	25	1.90
1046493--1046529	18	2.0	19	89	5	58	37	0	0	62	0.96
1051419--1051496	22	3.5	22	92	3	122	42	19	24	14	1.88
1051413--1051543	22	5.6	25	80	9	79	38	17	24	19	1.92
1052032--1052059	8	3.5	8	100	0	56	60	0	0	39	0.97
1056458--1056575	41	3.0	41	83	6	145	34	18	20	26	1.96
1058218--1058334	43	2.7	43	82	0	153	24	28	29	17	1.98
1059732--1059779	23	2.1	23	84	0	60	33	20	27	18	1.96
1063890--1063934	23	2.0	23	95	0	81	26	20	8	44	1.80
1064348--1064550	73	2.8	73	81	3	185	35	7	12	44	1.71
1064249--1064615	72	5.1	72	75	4	276	34	6	13	45	1.70
1065358--1065424	35	1.9	35	87	0	98	49	10	5	34	1.62
1065445--1065579	9	15.6	9	76	13	70	48	14	0	37	1.45
1065452--1065505	24	2.2	24	96	0	99	51	11	0	37	1.37
1065446--1065570	36	3.6	36	86	9	172	48	14	0	36	1.44
1065479--1065606	45	2.9	45	84	4	154	49	15	0	35	1.45
1065446--1065606	45	4.4	36	75	17	134	49	14	0	36	1.44
1071210--1071348	66	2.1	65	86	5	190	42	18	24	14	1.88
1071697--1071841	43	3.4	42	80	10	168	21	17	28	32	1.96
1074895--1074944	23	2.2	23	85	7	66	18	4	52	26	1.63
1075449--1075506	18	3.3	18	82	4	73	41	8	13	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1083382--1083416	6	5.8	6	100	0	70	82	0	0	17	0.66
1085771--1085844	35	2.1	35	92	0	121	28	9	6	55	1.57
1089098--1089174	37	2.1	37	95	0	136	20	31	24	23	1.98
1089048--1089214	87	1.9	87	85	2	228	22	26	23	26	2.00
1091919--1091963	22	2.0	22	100	0	90	31	20	22	26	1.98
1093197--1093442	27	9.1	27	89	3	336	43	19	19	18	1.89
1093802--1093895	28	3.4	28	80	2	100	20	27	24	27	1.99
1096638--1096671	17	2.0	17	94	0	59	47	26	0	26	1.53
1100307--1100337	11	2.8	11	90	0	53	32	0	0	67	0.91
1100459--1100516	29	2.0	30	89	3	91	55	13	3	27	1.55
1100498--1100551	25	2.3	23	83	6	63	68	12	0	18	1.21
1113020--1113353	27	12.4	27	81	6	342	20	16	19	44	1.87
1113049--1113353	80	3.8	81	84	4	384	19	16	19	44	1.86
1113313--1113370	27	2.2	26	82	14	66	17	12	18	51	1.75
1115382--1116560	598	2.0	593	89	1	1833	41	21	15	22	1.90
1123303--1123369	20	3.3	20	85	0	89	35	25	20	17	1.95
1123985--1126330	656	3.6	656	87	1	3326	24	13	20	41	1.89
1125835--1126803	485	2.0	486	84	1	1246	23	14	20	41	1.89
1126321--1128116	656	2.7	651	86	2	2364	24	13	19	41	1.88
1129012--1129058	24	1.9	25	82	4	60	34	4	27	34	1.77
1134080--1134131	26	2.0	26	100	0	104	38	11	7	42	1.70
1138313--1138461	75	2.0	75	94	2	264	18	24	18	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1138464--1138493	12	2.4	13	94	5	53	20	6	6	66	1.38
1139017--1140083	533	2.0	534	99	0	2109	34	16	19	29	1.94
1152294--1152341	24	2.0	25	83	4	62	33	8	25	33	1.86
1154376--1154422	24	1.9	25	82	4	60	34	4	27	34	1.77

Tables:   1   2   3   4

The End!