genome.fa.s757.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold304
Parameters: 2 7 7 80 10 50 1000
Length:  1004668

Tables:   1   2   3   4   

This is table  3  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636663--636711	24	2.2	22	85	10	64	36	10	20	32	1.86
641389--641450	27	2.3	26	74	15	65	43	6	3	46	1.45
641458--642154	346	2.0	347	99	0	1380	24	17	12	44	1.84
644814--644853	20	2.0	20	90	0	62	50	12	10	27	1.72
644802--644867	35	1.9	34	90	6	107	46	13	7	31	1.71
646954--646996	3	14.0	3	81	13	52	62	0	2	34	1.08
646958--646996	14	2.8	14	96	0	69	61	0	2	35	1.10
646954--646996	17	2.5	17	85	10	61	62	0	2	34	1.08
649836--649861	11	2.4	11	100	0	52	38	0	0	61	0.96
655247--655334	40	2.1	42	93	4	153	31	3	0	64	1.10
655306--655352	14	3.5	14	74	11	53	31	4	0	63	1.13
655306--655357	26	2.0	26	96	0	95	28	3	0	67	1.08
655310--655365	26	2.2	26	83	0	67	39	3	0	57	1.16
658856--658898	15	2.9	14	83	10	50	34	0	4	60	1.17
664444--664493	21	2.4	21	75	18	50	20	2	2	76	0.99
668436--668510	35	2.1	35	100	0	150	26	25	8	40	1.83
668436--668527	35	2.6	35	91	3	132	26	26	6	41	1.80
672855--672895	18	2.3	18	87	8	57	43	0	2	53	1.13
673185--673455	137	2.0	137	97	0	515	39	7	12	40	1.70
675952--676007	22	2.5	23	82	2	69	51	1	1	44	1.22
675983--676022	16	2.5	16	91	0	62	47	2	7	42	1.45
678436--678483	17	2.8	17	75	18	55	68	2	0	29	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679091--679140	21	2.4	21	87	9	68	46	8	0	46	1.32
679983--680032	21	2.4	21	87	9	68	44	8	2	46	1.44
690296--690415	41	2.9	41	94	0	195	29	22	21	26	1.99
690988--691022	2	17.5	2	100	0	70	51	48	0	0	1.00
696129--696190	30	2.1	30	84	0	79	54	11	3	30	1.51
706462--706513	22	2.4	22	90	6	79	48	1	11	38	1.51
709548--709589	17	2.5	17	96	0	75	33	9	19	38	1.84
710281--710344	20	3.2	20	66	27	55	26	14	34	25	1.94
710268--710344	39	2.0	39	97	0	145	25	12	36	24	1.92
715606--715800	51	3.8	50	80	4	194	31	27	15	25	1.96
715603--715796	102	1.9	102	84	4	257	31	27	15	24	1.95
719739--720251	255	2.0	256	99	0	1019	32	12	13	41	1.81
721185--721259	27	2.8	26	84	8	80	25	20	17	37	1.94
737871--738219	113	3.1	113	77	8	395	33	17	21	27	1.96
738140--738279	74	1.9	75	86	1	201	29	18	22	29	1.98
738005--738760	188	3.9	188	81	9	966	33	17	21	28	1.95
738536--738674	74	1.9	75	86	1	199	29	18	22	29	1.97
740843--740913	35	2.0	36	97	2	135	28	14	15	42	1.86
745946--746048	43	2.3	43	82	9	111	26	21	22	30	1.99
748370--748418	20	2.5	19	86	3	62	34	8	10	46	1.67
751969--752016	25	1.9	25	86	0	69	39	12	14	33	1.84
766377--766452	19	4.0	19	89	0	125	39	9	13	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766441--766486	23	2.0	23	87	4	67	32	4	13	50	1.61
766956--767033	30	2.4	32	82	16	83	19	5	3	71	1.20
767089--767146	21	2.6	22	81	13	66	27	3	3	65	1.25
771536--771572	9	3.9	9	92	7	56	89	10	0	0	0.49
771533--771572	10	4.0	10	90	9	64	87	12	0	0	0.54
773094--773231	45	3.1	45	66	10	122	29	21	24	24	1.99
773213--773617	132	3.1	132	91	0	666	30	18	22	28	1.97
774335--774377	23	1.9	23	85	4	61	37	6	16	39	1.75
781876--781966	42	2.2	42	85	0	119	31	23	20	24	1.98
781876--781984	42	2.6	41	80	8	112	31	22	22	24	1.98
783955--784002	17	2.8	17	78	6	53	45	2	0	52	1.12
786141--786181	17	2.5	16	92	4	64	65	7	0	26	1.18
787852--787885	13	2.4	14	90	9	52	58	0	2	38	1.13
814993--815057	12	5.3	12	76	12	53	47	0	1	50	1.10
814974--815031	29	2.0	30	83	16	77	51	1	3	43	1.28
822414--822462	25	1.9	26	87	4	73	28	14	16	40	1.87
825707--825742	18	2.0	18	100	0	72	55	0	11	33	1.35
826441--826490	25	2.0	26	84	4	66	56	6	2	36	1.36
832624--833160	50	10.6	50	87	3	686	22	30	20	25	1.98
844162--844302	46	3.0	46	76	9	124	29	18	24	27	1.98
845799--846021	51	4.4	52	72	6	161	26	15	27	31	1.96
845833--846017	101	1.8	101	84	5	257	24	16	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845833--846025	102	1.9	101	84	5	255	24	17	26	31	1.97
846243--846274	16	2.0	16	93	0	55	59	0	15	25	1.36
848863--848893	15	2.1	15	93	0	53	32	22	0	45	1.53
855228--855305	26	3.0	26	80	0	93	29	24	8	37	1.86
858119--858280	64	2.5	64	83	2	200	30	4	30	34	1.79
866054--866147	20	4.7	20	82	0	116	28	36	5	29	1.79
866521--866584	28	2.2	29	83	2	76	39	12	23	25	1.90
881504--881558	23	2.3	23	73	14	58	32	12	25	29	1.93
886596--886761	41	4.0	41	100	0	332	38	16	12	32	1.86
896848--896897	21	2.3	21	83	10	57	14	24	16	46	1.83
900161--900318	74	2.1	74	85	2	210	37	2	24	35	1.69
900526--900574	26	2.1	22	82	17	55	30	16	10	42	1.81
902398--902668	138	2.0	138	84	2	357	42	12	9	35	1.76
903597--903643	22	2.1	22	84	7	60	42	6	4	46	1.48
905878--905917	18	2.2	18	86	0	62	40	0	10	50	1.36
905879--905913	6	5.8	6	96	0	61	37	0	11	51	1.38
906676--906732	25	2.3	25	84	6	71	29	3	0	66	1.08
906685--906733	12	4.0	12	76	12	55	30	2	0	67	1.02
907307--907351	16	2.8	16	86	3	63	40	26	2	31	1.68
907372--907446	32	2.3	32	81	6	80	38	21	9	30	1.85
911240--911346	51	2.1	51	92	0	178	32	28	12	26	1.92
913368--913432	24	2.5	27	75	25	68	69	6	9	15	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913649--913674	2	13.0	2	100	0	52	50	0	0	50	1.00
914830--914874	16	2.8	16	79	3	54	31	2	24	42	1.67
924819--924892	3	24.7	3	83	5	87	62	1	2	33	1.18
926524--928707	129	16.9	129	98	0	3926	29	21	18	30	1.97
928675--929074	129	3.1	129	96	0	719	28	22	17	31	1.97
929097--929181	44	1.9	44	92	0	143	25	25	20	28	1.99
931288--931322	15	2.2	16	95	5	63	2	17	0	80	0.84
931309--931374	27	2.5	26	85	9	80	10	7	9	72	1.27
935881--935917	3	12.3	3	100	0	74	67	0	0	32	0.91
939901--939934	4	8.5	4	100	0	68	50	26	0	23	1.50
942281--942335	21	2.6	21	97	0	101	18	9	18	54	1.69
943503--943555	27	2.0	27	88	0	79	20	26	28	24	1.99
945123--945147	13	1.9	13	100	0	50	56	36	0	8	1.29
945975--946077	44	2.4	42	82	4	125	33	25	15	25	1.95
947506--947535	12	2.5	12	94	0	51	30	0	6	63	1.20
947498--947541	14	3.3	13	81	12	54	29	0	6	63	1.20
951418--951473	22	2.5	22	80	8	60	44	16	1	37	1.58
951454--951509	21	2.8	19	76	10	67	37	14	8	39	1.77
951465--951508	21	2.1	21	95	0	79	38	11	9	40	1.73
951893--952044	44	3.5	44	75	14	140	28	22	21	27	1.99
951793--952044	128	2.0	129	81	3	303	28	21	20	29	1.98
952350--952685	126	2.6	126	88	3	467	28	25	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952350--952725	44	8.7	44	80	6	392	29	24	17	28	1.97
952739--953214	88	5.4	88	87	0	655	20	25	28	26	1.99
952939--953149	43	4.8	44	67	11	144	19	28	26	25	1.99
953028--953165	44	3.1	44	67	8	118	19	27	28	23	1.98
959808--959846	19	2.0	21	85	10	55	69	5	10	15	1.34
959993--960069	19	3.7	21	80	13	77	41	16	5	36	1.71
959993--960050	22	2.6	22	84	7	73	43	17	3	36	1.66
960006--960082	19	3.8	19	89	6	91	38	16	7	36	1.78
960780--960852	29	2.5	29	100	0	146	34	8	21	35	1.84
960956--960980	7	3.6	7	100	0	50	36	0	0	64	0.94

Tables:   1   2   3   4