genome.fa.s801.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold173
Parameters: 2 7 7 80 10 50 1000
Length:  1189743

Tables:   1   2   3   4   

This is table  2  of  4  ( 403 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320561--320657	21	4.7	21	89	2	135	39	11	11	38	1.77
320649--320693	21	2.0	23	83	8	58	37	4	13	44	1.64
327542--327575	6	5.7	6	96	0	50	76	0	23	0	0.79
328803--328987	44	4.2	44	62	15	112	30	19	22	27	1.98
328757--329407	132	4.9	132	92	0	1043	30	20	23	25	1.98
329493--329872	44	8.7	43	72	12	233	27	19	24	28	1.99
329495--329612	45	2.7	43	78	13	123	27	21	24	26	1.99
329477--329882	217	1.9	217	92	0	677	28	19	24	27	1.99
330353--330415	19	3.2	19	89	8	99	38	11	12	38	1.79
330353--330435	21	4.1	21	90	6	120	40	10	12	36	1.77
330353--330435	40	2.1	40	86	8	116	40	10	12	36	1.77
330825--330853	15	1.9	15	100	0	58	27	0	6	65	1.18
334320--334432	49	2.3	49	82	1	127	26	18	23	31	1.97
335391--335415	13	1.9	13	100	0	50	52	16	16	16	1.76
336819--336865	9	5.2	9	86	0	67	68	14	0	17	1.22
348131--348183	11	4.7	12	75	15	51	26	28	0	45	1.54
348129--348181	23	2.4	21	81	12	61	24	30	0	45	1.54
348245--348269	12	2.1	12	100	0	50	60	0	0	40	0.97
350555--350779	123	1.8	123	95	0	405	32	23	16	27	1.96
353619--354130	256	2.0	255	94	0	907	31	9	17	41	1.81
355366--355456	13	7.1	13	81	2	85	35	17	2	45	1.61
355366--355466	26	3.9	25	76	6	94	34	17	1	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355375--355466	13	7.2	12	77	8	58	32	18	2	46	1.61
355626--355690	25	2.6	25	73	9	69	32	23	15	29	1.95
375236--375283	21	2.3	21	85	7	62	33	4	2	60	1.27
379395--380487	546	2.0	547	90	0	1715	25	15	25	33	1.95
386743--386813	17	3.9	17	72	18	54	54	0	2	42	1.14
388769--388813	5	9.4	5	90	9	76	62	0	0	37	0.96
404397--404447	22	2.2	23	82	10	59	35	1	1	60	1.19
412108--412161	22	2.5	22	77	11	58	29	7	5	57	1.49
415365--415422	21	2.8	20	82	10	62	17	25	39	17	1.91
423129--423162	18	2.0	18	88	11	54	38	17	26	17	1.92
428451--428475	2	12.5	2	100	0	50	48	0	0	52	1.00
432578--432708	55	2.4	55	85	0	181	22	19	33	23	1.97
435531--435598	34	2.1	31	83	8	82	22	23	20	33	1.97
435887--435950	27	2.4	27	78	0	74	31	15	20	32	1.94
436965--437053	44	2.0	44	93	4	153	29	35	7	26	1.85
444788--444840	23	2.3	23	83	0	70	41	22	11	24	1.86
454439--454826	44	8.8	44	92	0	614	29	18	28	24	1.98
455276--455320	21	2.1	21	100	0	90	11	13	17	57	1.64
462268--462334	34	2.0	34	82	11	84	26	22	22	28	1.99
462571--462652	27	3.1	27	80	3	96	40	17	13	29	1.87
463676--463764	44	2.0	44	93	4	153	28	38	7	25	1.84
465810--465840	16	1.9	16	93	0	53	35	6	9	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465874--465920	23	2.0	23	87	0	67	31	4	4	59	1.36
474039--474082	22	2.0	22	100	0	88	59	13	13	13	1.62
474143--474207	23	2.8	23	69	17	62	12	7	33	46	1.70
493184--493297	33	3.7	30	72	21	85	64	12	4	19	1.44
493218--493292	22	3.2	23	78	14	73	68	12	2	17	1.32
493205--493273	26	2.5	27	84	13	79	66	13	2	17	1.36
493228--493307	12	6.4	12	73	15	65	67	13	1	17	1.30
493243--493274	16	2.0	16	100	0	64	68	18	0	12	1.20
493429--493460	15	2.1	15	94	0	55	65	6	3	25	1.31
494956--495428	132	3.6	132	91	0	741	27	24	19	28	1.99
495358--495471	44	2.6	45	79	9	144	29	24	18	27	1.98
496733--496821	44	2.0	44	89	2	135	15	26	15	41	1.88
507890--507921	15	2.1	15	94	0	55	65	6	3	25	1.31
510531--510611	26	3.0	27	76	7	74	34	19	23	22	1.96
518582--518630	16	3.1	16	93	0	80	38	2	36	22	1.66
518609--518699	45	2.0	44	87	6	130	32	4	28	34	1.77
520243--520268	6	4.3	6	100	0	52	50	0	0	50	1.00
520658--520682	13	1.9	13	100	0	50	20	16	8	56	1.65
520811--520870	21	2.9	21	97	0	111	55	13	3	28	1.54
521189--521257	29	2.4	29	92	0	111	40	21	8	28	1.83
531137--531173	11	3.5	11	96	3	67	70	0	0	29	0.88
531137--531197	22	2.8	23	79	20	69	68	1	0	29	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533693--533741	20	2.6	18	78	12	53	38	0	4	57	1.18
533731--533774	9	5.0	9	81	15	56	27	0	2	70	0.99
537781--537817	3	12.3	3	94	0	56	32	5	32	29	1.80
548801--548873	28	2.6	28	80	4	85	30	23	23	23	1.99
549212--549444	27	8.6	27	85	3	290	17	20	20	42	1.90
553338--553370	17	2.0	17	88	5	50	36	3	6	54	1.41
553948--554003	25	2.2	25	82	17	80	35	1	5	57	1.32
556056--556109	27	2.0	27	100	0	108	37	14	11	37	1.82
557474--557515	19	2.2	20	86	4	59	11	35	0	52	1.38
563586--563690	53	2.0	53	88	0	156	46	15	9	28	1.77
572532--572582	12	4.3	12	80	14	61	74	1	0	23	0.92
572533--572581	23	2.2	23	88	3	73	73	2	0	24	0.94
575829--575878	17	2.9	17	77	11	57	28	22	4	46	1.70
580223--580255	17	1.9	17	100	0	66	24	21	6	48	1.72
586734--586794	21	2.8	22	87	9	90	39	27	19	13	1.89
594536--594601	23	2.9	23	93	0	114	42	21	13	22	1.88
599148--599188	21	1.9	21	85	5	55	46	7	24	21	1.77
601947--601997	23	2.2	23	89	0	75	41	21	7	29	1.81
611326--611363	14	2.7	15	88	8	53	23	23	21	31	1.98
624441--624519	37	2.1	37	88	4	115	17	8	30	43	1.80
629857--629937	26	3.2	25	73	18	69	32	8	14	44	1.76
638376--638634	64	4.0	64	100	0	518	41	15	15	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644538--644612	37	2.0	37	94	0	132	22	34	13	29	1.92
656036--656077	19	2.3	18	80	12	50	54	0	2	42	1.13
659334--659397	22	2.9	22	86	4	94	21	20	14	43	1.87
668999--669146	66	2.2	66	84	6	188	48	12	9	29	1.72
672834--672872	20	2.0	20	94	0	69	48	0	2	48	1.15
672959--673025	34	1.9	35	93	3	118	46	11	8	32	1.72
674176--674208	13	2.7	13	90	9	52	36	12	15	36	1.84
675173--675804	51	12.5	50	84	5	526	29	15	26	28	1.96
675156--675797	100	6.4	102	93	1	863	28	15	26	28	1.96
682860--682892	16	1.9	18	88	11	52	33	9	0	57	1.30
683532--683970	219	2.0	219	96	0	808	26	17	25	30	1.97
684845--684901	17	3.1	19	77	12	64	42	7	17	33	1.76
686800--686828	14	2.1	14	100	0	58	51	6	13	27	1.66
689248--689282	18	1.9	18	94	0	61	0	0	57	42	0.99
689254--689284	12	2.6	12	94	0	53	0	0	61	38	0.96
702729--702778	24	2.2	23	80	13	59	34	4	4	58	1.36
703065--703098	17	1.9	18	88	5	52	41	8	0	50	1.34
707490--707530	15	2.7	15	96	0	73	68	9	2	19	1.29
707534--707566	10	3.0	11	91	8	50	78	0	21	0	0.75
709154--709229	36	2.1	36	97	0	143	38	18	21	22	1.94
709591--709783	44	4.5	44	73	12	175	30	20	20	28	1.98
713913--713966	25	2.2	25	93	0	90	61	9	9	20	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716520--716650	50	2.6	52	79	6	151	37	12	15	34	1.86
721156--721184	2	14.5	2	100	0	58	48	0	51	0	1.00
750093--750165	35	2.1	36	92	2	121	30	26	6	36	1.82
749668--750556	457	1.9	457	97	0	1679	37	16	7	37	1.77
752321--752455	29	4.5	29	76	13	107	33	2	14	49	1.58
752778--752853	36	2.1	36	87	4	109	32	10	19	36	1.86
752778--752864	36	2.4	36	86	3	104	33	9	17	40	1.81
753476--753554	17	4.6	17	75	0	68	25	8	20	45	1.79
755257--755290	14	2.4	14	90	0	50	38	0	11	50	1.39
755325--755349	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4