Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold173
Parameters: 2 7 7 80 10 50 1000
Length:  1189743

Tables:   1   2   3   4   

This is table  4  of  4  ( 403 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1056316--1056634
143
2.2
143
82
1
388
33
23
21
21
1.97
1064650--1064727
33
2.4
33
86
0
120
37
24
12
25
1.91
1066108--1066159
18
2.9
18
81
15
63
19
0
0
80
0.71
1066109--1066159
8
6.1
8
77
8
57
17
0
0
82
0.67
1067116--1067158
18
2.2
20
88
8
63
81
0
16
2
0.79
1072835--1072875
6
7.0
6
94
5
75
31
0
0
68
0.90
1081119--1081172
27
2.0
28
88
3
83
25
11
27
35
1.90
1081802--1081837
18
1.9
19
88
5
56
33
2
0
63
1.08
1081785--1081834
25
2.0
26
84
11
68
36
2
4
58
1.29
1082037--1082370
43
7.8
43
87
1
449
27
29
17
25
1.97
1082037--1082384
128
2.7
129
87
1
477
28
30
16
24
1.97
1085413--1085460
24
2.0
24
95
0
87
56
6
0
37
1.25
1086236--1086273
7
5.4
7
90
0
58
34
47
0
18
1.49
1085984--1086330
186
1.8
186
85
4
460
42
28
1
26
1.64
1086119--1086408
133
2.2
137
83
7
380
41
30
1
27
1.64
1086412--1086442
7
4.4
7
100
0
62
32
38
0
29
1.57
1086850--1087162
41
7.6
41
83
4
364
29
24
20
24
1.99
1089703--1089736
6
5.3
6
86
13
50
64
2
2
29
1.22
1096538--1096575
16
2.4
16
86
4
60
36
0
39
23
1.55
1098346--1098375
12
2.5
12
88
0
51
20
40
30
10
1.85
1098482--1098602
63
1.9
62
81
5
145
25
28
23
23
2.00
1099098--1099144
14
3.6
14
77
16
64
74
2
17
6
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1099519--1099565
4
11.8
4
100
0
94
51
0
25
23
1.49
1100141--1100198
28
2.1
28
100
0
116
31
3
22
43
1.70
1100149--1100206
28
2.2
26
88
11
84
31
5
18
44
1.72
1104813--1104995
72
2.6
72
98
0
350
32
25
9
33
1.87
1106047--1106089
10
4.2
10
80
13
52
72
0
6
20
1.08
1112441--1112526
44
2.0
44
95
0
154
27
24
26
20
1.99
1137877--1137906
1
30.0
1
100
0
60
0
0
0
100
0.00
1137963--1138016
1
54.0
1
92
0
90
0
0
3
96
0.23
1137956--1138013
28
2.1
28
90
0
89
1
3
5
89
0.63
1150414--1150475
18
3.4
18
88
0
79
27
11
25
35
1.90
1150679--1150721
18
2.4
18
80
7
52
46
2
0
51
1.13
1156577--1156619
13
3.3
13
83
9
61
60
0
0
39
0.97
1157433--1157528
40
2.4
41
84
5
124
29
39
11
19
1.87
1157538--1157637
39
2.6
39
80
0
110
30
38
12
20
1.88
1167264--1167326
30
2.1
30
82
11
76
30
14
7
47
1.72
1168044--1168073
3
10.3
3
92
7
53
0
33
0
66
0.92
1168047--1168073
14
1.9
14
100
0
54
0
33
0
66
0.92
1168029--1168073
17
2.6
17
89
0
63
0
40
0
60
0.97
1168341--1168391
23
2.3
21
75
21
50
52
3
0
43
1.19
1183148--1183176
12
2.3
13
94
5
51
48
17
13
20
1.81
1186756--1186816
25
2.4
25
78
5
61
39
4
3
52
1.39

Tables:   1   2   3   4

The End!