genome.fa.s984.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold278
Parameters: 2 7 7 80 10 50 1000
Length:  1156311

Tables:   1   2   3   4   

This is table  1  of  4  ( 445 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11306--11337	10	3.1	11	86	13	50	78	0	15	6	0.95
32437--32472	17	2.1	17	100	0	72	22	5	30	41	1.76
34265--34322	29	2.1	28	90	6	91	51	8	18	20	1.72
56851--56930	16	4.6	18	69	23	55	27	7	1	63	1.29
56843--56914	33	2.2	32	82	7	90	25	5	2	66	1.27
57978--58006	15	2.0	15	93	6	51	24	0	0	75	0.80
63655--64059	50	8.1	50	82	3	431	22	28	21	27	1.99
65364--65399	16	2.2	17	95	5	65	22	5	19	52	1.66
65406--66357	6	158.7	6	95	2	1635	17	15	16	51	1.77
66616--66736	62	2.0	61	95	1	215	23	8	23	45	1.79
75044--75203	77	2.1	78	96	1	295	49	5	5	40	1.48
89899--89943	6	7.5	6	79	0	54	13	4	4	77	1.07
94182--94222	22	1.9	21	85	5	55	36	12	17	34	1.87
94651--94708	29	2.0	29	83	6	73	50	12	5	32	1.62
104179--104313	70	1.9	70	100	0	270	48	4	4	42	1.43
104717--104781	28	2.4	28	84	2	78	47	12	7	32	1.69
120189--120290	27	3.8	27	78	7	100	40	16	19	23	1.91
124606--124647	14	2.9	15	82	7	59	47	40	0	11	1.40
124606--124650	22	2.0	22	87	8	65	48	37	0	13	1.42
124606--124650	8	6.0	8	82	15	60	48	37	0	13	1.42
147781--147849	24	2.8	24	93	2	111	18	30	21	28	1.97
147777--147947	24	7.0	24	74	11	100	18	26	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147806--147941	72	1.9	72	80	6	159	19	25	19	36	1.95
147876--147948	25	3.0	24	82	13	87	19	24	20	35	1.95
151368--151497	59	2.2	57	85	5	172	40	10	15	33	1.82
151895--151944	23	2.2	23	80	19	61	66	2	2	30	1.14
151876--152007	30	4.3	31	76	11	112	68	0	4	26	1.14
151942--151983	13	3.2	13	80	10	50	66	0	9	23	1.21
151932--152002	24	2.7	24	77	16	70	70	0	5	23	1.08
152302--152347	24	2.0	23	87	8	67	32	0	0	67	0.91
153058--153098	21	2.0	21	85	9	57	51	7	4	36	1.51
168281--168386	56	1.9	56	84	0	140	23	21	22	32	1.98
168360--168602	80	3.0	80	77	3	256	21	15	25	37	1.93
168365--168556	40	4.8	40	67	10	113	21	15	25	37	1.92
171664--171751	3	29.3	3	92	0	149	3	29	0	67	1.07
171664--171763	12	8.3	12	92	0	128	6	27	0	67	1.14
175556--175627	31	2.4	30	86	4	92	36	8	9	45	1.67
175788--175857	31	2.3	31	80	4	81	35	11	10	42	1.74
178559--178593	15	2.3	15	100	0	70	60	14	20	5	1.54
181987--182034	25	1.9	25	100	0	96	35	16	18	29	1.93
182633--182675	21	2.1	20	91	4	68	48	39	0	11	1.40
191971--192006	18	2.1	17	89	5	54	47	22	0	30	1.52
196660--196820	45	3.6	45	92	0	259	45	16	15	22	1.84
196650--196845	45	4.4	45	83	5	191	46	15	14	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196650--196868	90	2.4	90	84	4	264	45	15	15	22	1.84
206500--206558	27	2.2	27	88	11	86	49	11	13	25	1.76
206503--206569	27	2.5	26	76	21	68	44	13	13	28	1.81
213452--213482	6	5.2	6	92	0	53	45	0	3	51	1.17
214791--214816	12	2.2	12	100	0	52	38	15	0	46	1.46
221124--221221	48	2.0	48	94	0	169	32	21	16	29	1.95
222097--222159	8	7.8	8	79	10	74	36	0	1	61	1.05
224733--224971	119	2.0	120	98	0	462	32	10	19	38	1.85
228490--228627	39	3.5	39	91	0	213	25	3	25	45	1.69
233441--233729	51	5.7	51	76	7	300	28	27	14	29	1.96
233437--233725	102	2.8	102	95	0	515	28	27	14	29	1.96
241587--241639	20	2.7	20	94	2	90	60	5	0	33	1.20
241623--241715	8	10.4	8	70	17	51	52	2	1	44	1.20
241587--241663	19	4.1	19	88	6	70	55	5	0	38	1.22
241620--241715	18	5.3	18	67	18	56	53	2	1	43	1.19
241600--241716	10	12.7	9	66	17	62	52	3	0	42	1.23
247979--248147	52	3.2	52	76	3	160	36	24	15	23	1.94
247979--248147	26	6.5	26	76	5	137	36	24	15	23	1.94
247979--248146	78	2.2	78	83	4	205	35	25	16	23	1.94
252515--252810	68	4.5	68	78	8	313	28	22	15	33	1.94
252556--252805	129	1.9	129	84	3	333	28	21	16	33	1.95
255986--256037	3	17.3	3	76	7	52	59	0	7	32	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257791--257933	50	2.9	49	81	6	153	30	16	20	32	1.95
258130--258351	43	5.1	43	68	6	160	24	24	24	26	2.00
258090--258545	44	10.4	44	72	5	289	26	25	19	28	1.99
258090--258541	87	5.2	87	82	2	521	26	24	19	28	1.99
258463--258967	216	2.3	217	89	2	764	26	23	19	31	1.98
261175--261274	12	8.4	11	72	15	58	9	10	2	79	1.03
261174--261222	22	2.3	22	85	3	64	2	14	2	81	0.87
261213--261280	13	5.3	13	70	10	50	14	5	2	76	1.09
261209--261280	26	2.9	25	75	16	71	13	5	2	77	1.05
268588--268730	71	2.0	71	81	8	166	40	18	11	30	1.85
268658--268701	23	1.9	23	90	0	70	40	15	15	27	1.88
268658--268709	23	2.3	23	86	0	68	38	15	17	28	1.90
268726--268992	47	5.7	47	94	0	453	41	14	17	26	1.88
268726--268992	23	11.4	24	71	5	188	41	14	17	26	1.88
268684--268978	141	2.1	141	87	1	421	40	15	17	26	1.89
269875--269959	43	1.9	45	84	13	115	29	32	20	17	1.95
271108--271136	14	2.0	15	93	6	51	51	20	0	27	1.47
285394--285431	19	2.0	20	89	5	60	73	5	7	13	1.22
299418--299477	31	1.9	31	100	0	120	41	13	6	38	1.70
300086--300137	24	2.2	24	89	0	77	51	7	1	38	1.42
304476--304527	24	2.2	24	85	0	68	50	7	3	38	1.50
306888--306996	54	2.0	55	96	1	202	34	6	9	49	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306998--307027	2	15.0	2	92	0	51	46	0	3	50	1.18
308546--308579	17	2.1	15	89	10	50	79	0	20	0	0.73
311846--311901	29	1.9	29	88	0	85	57	10	5	26	1.54
312564--312632	29	2.4	27	80	17	77	36	4	1	57	1.27
318181--318218	19	2.0	19	94	0	67	63	13	0	23	1.30
320780--320825	24	2.0	23	83	12	58	41	4	15	39	1.67
326447--326523	26	3.0	26	76	14	86	36	22	23	18	1.95
326758--326933	27	6.5	27	86	2	255	19	19	18	42	1.90
331069--331108	20	2.0	20	85	9	55	25	7	15	52	1.68
331241--331286	22	2.1	22	83	0	56	13	13	2	71	1.23
331802--331855	22	2.5	22	68	0	54	74	3	16	5	1.16
332882--332911	3	10.0	3	100	0	60	33	0	0	66	0.92
336460--336533	36	2.1	36	100	0	148	33	2	27	36	1.71
339911--340007	45	2.2	45	83	3	115	36	24	16	22	1.94
345566--345607	22	1.9	22	90	9	68	66	4	7	21	1.35
348032--348063	15	2.0	17	88	11	50	56	3	0	40	1.15
349028--349069	22	1.9	22	90	0	66	33	16	19	30	1.94
355018--355129	43	2.6	43	81	8	147	31	29	18	20	1.97
381697--381721	11	2.3	11	100	0	50	40	0	8	52	1.31
383163--383192	8	3.8	8	90	0	51	0	40	0	60	0.97
384704--384750	21	2.1	23	92	7	80	72	0	0	27	0.85
384801--384844	11	3.9	11	80	14	54	34	2	0	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390708--390736	14	2.0	15	93	6	51	51	0	6	41	1.28
392670--392895	105	2.2	102	88	4	330	22	20	28	29	1.98
392808--393014	33	5.7	33	71	19	137	20	21	28	29	1.98
392841--392976	41	3.5	40	74	16	151	22	19	27	30	1.97
392804--393013	75	2.8	75	90	2	325	20	20	28	29	1.98
399782--400014	104	2.3	102	91	2	369	21	21	29	28	1.98
399915--400124	75	2.8	75	91	0	332	20	20	28	30	1.98
400696--401349	326	2.0	326	100	0	1308	34	12	16	36	1.87
403335--403366	16	2.0	16	100	0	64	37	31	0	31	1.58
406099--406142	20	2.2	20	95	0	79	27	6	9	56	1.55

Tables:   1   2   3   4