genome.fa.s984.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold278
Parameters: 2 7 7 80 10 50 1000
Length:  1156311

Tables:   1   2   3   4   

This is table  2  of  4  ( 445 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414518--414564	14	3.4	14	77	16	53	76	4	19	0	0.95
417250--417289	21	2.0	21	90	5	64	20	5	22	52	1.65
421997--423746	875	2.0	875	99	0	3482	33	10	15	40	1.82
428492--428631	40	3.5	40	87	0	190	20	32	16	31	1.94
428494--428592	20	4.9	20	65	4	65	21	30	16	32	1.95
428492--428653	80	2.0	80	79	4	175	20	32	17	30	1.95
430128--430152	10	2.5	10	100	0	50	44	0	12	44	1.41
430613--430793	45	4.0	44	75	6	148	24	19	13	41	1.88
432471--432783	42	7.4	41	85	6	385	33	21	18	26	1.96
432471--432783	85	3.7	84	85	5	391	33	21	18	26	1.96
432471--432775	127	2.4	127	85	4	409	33	20	19	26	1.96
433167--433235	21	3.3	21	85	4	86	4	42	18	34	1.71
438622--438902	9	32.3	9	73	13	232	32	1	20	45	1.59
438611--438684	16	4.4	16	80	9	76	33	1	18	45	1.58
438679--438796	16	6.9	17	74	14	91	31	0	22	44	1.59
438653--438903	79	3.2	79	86	7	334	32	1	20	45	1.59
440931--441138	103	2.0	102	92	0	344	38	30	3	27	1.73
440936--441167	103	2.3	102	87	3	304	41	29	3	25	1.70
441126--441341	14	15.5	14	67	11	68	47	31	3	17	1.64
441217--441356	7	19.9	7	70	12	54	45	32	3	17	1.66
441291--441454	7	22.7	7	72	10	91	42	36	2	18	1.63
441396--441464	22	3.2	21	82	10	77	37	42	5	14	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441671--442137	114	4.1	115	88	2	672	28	24	21	25	1.99
441911--442371	192	2.5	186	85	5	615	24	24	22	27	2.00
442216--442371	73	2.2	71	85	2	204	23	22	23	30	1.99
446987--447188	45	4.5	45	84	0	251	28	23	16	31	1.96
455461--455505	19	2.3	20	85	7	58	37	11	24	26	1.89
457995--458052	22	2.6	22	81	7	64	41	17	5	36	1.72
459611--459709	50	2.0	50	90	5	157	19	16	2	62	1.42
463157--463296	3	47.0	3	68	4	59	33	5	7	54	1.50
463583--463623	19	2.2	19	83	16	50	17	9	4	68	1.35
463732--463776	21	2.2	20	84	11	56	28	11	2	57	1.45
463817--464221	108	3.8	106	86	4	530	30	13	18	37	1.89
463799--464221	214	2.0	212	85	5	568	30	13	17	37	1.89
475867--476091	45	5.0	45	91	0	333	26	17	26	29	1.97
476108--476489	44	8.8	43	70	13	207	30	20	20	27	1.98
476183--476521	129	2.6	129	86	1	466	31	20	20	27	1.97
476412--476517	44	2.4	44	84	3	133	31	18	19	30	1.96
477100--477139	20	2.0	20	95	0	71	15	42	25	17	1.88
478043--478182	3	47.0	3	73	1	111	32	4	5	57	1.40
478650--478919	107	2.5	108	88	2	382	31	15	17	34	1.92
480173--480220	15	3.2	15	87	0	60	31	45	16	6	1.72
486402--486451	20	2.9	16	78	21	64	38	6	0	56	1.24
486408--486447	20	2.0	20	100	0	80	45	5	0	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489245--489292	22	2.3	21	85	7	62	27	4	8	60	1.44
491943--492089	40	3.7	40	84	0	195	31	26	14	27	1.95
493924--494070	40	3.7	40	77	0	132	31	25	12	29	1.93
495367--495408	22	1.9	22	85	0	57	28	42	11	16	1.84
496569--496980	27	15.2	27	79	6	323	19	16	21	42	1.89
496571--496964	81	4.9	79	81	5	416	18	16	21	42	1.89
496571--496964	54	7.3	54	82	0	428	18	16	21	42	1.89
508691--508728	19	2.0	19	85	10	51	21	39	0	39	1.53
508784--509503	359	2.0	359	99	0	1431	29	15	17	37	1.91
510834--510909	36	2.1	36	90	0	116	32	18	7	40	1.79
521042--521083	12	3.5	12	78	12	50	33	0	40	26	1.56
521042--521088	24	1.9	24	86	4	67	34	0	36	29	1.58
521749--522129	27	14.1	27	85	0	449	42	21	17	18	1.89
524937--524965	14	2.1	14	100	0	58	31	20	6	41	1.79
526263--526318	25	2.2	26	78	9	62	26	17	16	39	1.91
529475--529529	27	2.0	27	83	13	69	16	7	5	70	1.28
532701--532761	28	2.2	28	90	0	95	31	24	26	18	1.97
532661--532784	62	2.0	62	80	3	142	33	22	25	17	1.96
532972--533141	32	5.4	32	83	3	184	38	21	20	19	1.94
532971--533141	63	2.7	63	86	5	229	38	22	20	19	1.94
533333--533378	24	1.9	24	81	0	56	41	19	13	26	1.88
533447--533511	27	2.4	26	87	5	76	26	26	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533463--533522	27	2.2	27	93	0	102	23	23	20	33	1.97
533680--533777	46	2.1	46	84	3	126	25	37	21	15	1.92
535833--536067	122	1.9	122	99	0	461	34	14	7	44	1.72
562728--562763	18	1.9	19	94	5	65	75	0	5	19	1.00
567378--567450	38	1.9	38	91	0	119	31	35	4	28	1.76
574152--574209	30	1.9	30	85	0	80	41	6	22	29	1.80
574532--574756	33	6.4	33	69	23	138	20	17	26	34	1.95
574532--574729	102	1.9	104	91	2	328	21	18	26	34	1.96
577368--577481	27	4.3	27	80	1	122	41	19	21	17	1.91
578999--579036	17	2.2	17	100	0	76	36	10	18	34	1.85
579184--579267	25	3.4	22	73	20	69	29	21	21	27	1.98
579401--579443	23	1.9	23	90	4	70	53	2	4	39	1.34
587954--588050	49	2.0	49	97	0	185	34	25	4	36	1.75
587960--588062	49	2.3	44	83	12	122	36	26	2	33	1.71
594287--595308	511	2.0	511	98	0	1967	27	15	17	39	1.90
601084--601629	284	1.9	284	87	2	792	33	13	24	28	1.93
607504--607640	27	5.2	26	74	6	132	45	20	16	18	1.86
607504--607640	54	2.6	52	85	6	177	45	20	16	18	1.86
612326--612436	40	2.8	40	80	0	123	32	18	12	36	1.89
612879--612914	18	1.9	19	88	5	56	44	2	19	33	1.65
613348--613385	19	2.0	20	84	5	51	39	21	21	18	1.93
614910--614949	20	2.0	20	95	0	71	42	25	27	5	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614914--614958	20	2.2	20	84	0	54	44	24	24	6	1.77
627110--627173	32	2.0	32	87	0	92	29	9	7	53	1.61
627892--628213	77	4.1	77	80	6	319	29	12	12	45	1.79
627929--628216	154	1.8	155	81	9	361	29	12	12	45	1.78
629530--629568	19	2.2	18	86	9	53	33	10	23	33	1.88
646840--646897	25	2.3	25	80	11	66	34	1	3	60	1.24
651362--651557	27	7.3	27	84	5	227	38	20	21	19	1.94
651362--651541	81	2.2	81	88	3	256	38	21	21	18	1.94
651719--651773	26	2.1	26	86	6	76	18	23	20	38	1.93
651730--651802	26	2.8	27	84	13	100	16	23	21	38	1.93
657549--657587	6	6.5	6	81	0	51	76	2	2	17	1.01
657699--657822	5	23.4	5	67	21	58	70	4	2	22	1.15
658869--659101	69	3.4	69	92	0	376	43	19	12	24	1.85
658897--658956	24	2.5	24	75	8	59	50	21	1	26	1.59
658904--659095	24	8.3	23	68	15	74	44	19	10	25	1.83
658939--659095	24	6.8	23	68	10	88	43	19	12	24	1.86
660312--660352	22	2.0	21	90	9	66	63	4	4	26	1.35
661154--661199	23	2.1	22	88	8	67	56	4	8	30	1.49
663166--663417	126	2.0	126	96	0	468	33	22	12	31	1.91
663373--663527	41	3.8	41	87	0	220	33	28	18	19	1.96
668126--668183	22	2.6	21	81	10	62	77	3	3	15	1.04
668161--668189	14	2.0	15	93	6	51	79	0	13	6	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670627--670653	14	1.9	14	100	0	54	74	0	3	22	0.98
670623--670687	6	10.7	6	77	8	60	72	1	3	23	1.07
670641--670687	18	2.6	18	86	6	69	72	2	2	23	1.06
670623--670688	24	2.7	24	81	6	71	71	1	4	22	1.13
674784--674834	24	2.1	24	96	0	93	29	9	21	39	1.85
675469--675550	21	3.8	21	76	13	85	32	2	6	58	1.36
675464--675551	44	2.0	44	90	0	140	32	2	7	56	1.41
675843--675898	16	3.5	16	87	0	85	28	30	5	35	1.80
676521--676916	43	9.2	42	80	3	306	26	28	18	27	1.98
676521--676916	86	4.6	85	77	4	355	26	28	18	27	1.98

Tables:   1   2   3   4