genome.fa.s984.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold278
Parameters: 2 7 7 80 10 50 1000
Length:  1156311

Tables:   1   2   3   4   

This is table  4  of  4  ( 445 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957731--957793	31	2.0	32	87	3	92	34	23	4	36	1.76
961126--961311	50	3.7	50	80	2	196	23	27	23	26	2.00
962520--962570	20	2.5	20	81	9	59	45	11	13	29	1.79
966060--966106	10	4.4	10	82	12	58	46	0	0	53	1.00
966475--966504	15	2.0	15	93	0	51	50	6	6	36	1.55
971443--971473	14	2.2	14	94	0	53	45	16	6	32	1.72
974050--974085	19	1.9	18	88	5	54	30	5	0	63	1.17
979353--979408	29	1.9	29	85	0	76	42	21	8	26	1.82
982058--982086	5	5.8	5	100	0	58	82	0	0	17	0.66
982673--982706	16	2.2	15	89	5	50	61	0	5	32	1.20
987440--987467	10	2.8	10	100	0	56	10	28	10	50	1.71
994710--994978	130	2.1	131	97	0	513	42	6	12	39	1.69
995007--995033	2	13.5	2	100	0	54	51	0	0	48	1.00
995982--996033	27	1.9	27	88	7	79	46	3	1	48	1.31
995975--996042	28	2.5	28	80	4	86	47	5	7	39	1.56
995975--996049	26	2.8	27	79	4	71	44	6	8	41	1.60
998540--998579	21	1.9	21	84	0	53	27	2	0	70	1.01
998549--998588	15	2.6	15	84	4	53	25	2	0	72	0.97
1000080--1000157	40	2.0	40	82	9	99	41	2	3	52	1.33
1001538--1001575	19	2.0	19	94	0	67	28	10	28	31	1.90
1002112--1002139	7	4.0	7	100	0	56	42	28	14	14	1.84
1003154--1003197	18	2.4	18	80	0	52	36	40	2	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004051--1004093	21	2.0	21	95	0	77	39	25	9	25	1.85
1006455--1006898	220	2.0	219	94	1	782	24	13	19	42	1.87
1012799--1012832	17	2.0	17	88	0	50	44	0	2	52	1.16
1017546--1017589	22	2.0	22	82	8	54	31	0	0	68	0.90
1019925--1019972	21	2.3	21	74	0	51	54	0	0	45	0.99
1019962--1019986	6	4.2	6	100	0	50	52	0	0	48	1.00
1020464--1020496	10	3.4	10	91	4	50	24	0	3	72	0.98
1025592--1026201	44	13.9	44	83	2	690	29	20	26	24	1.99
1040356--1040538	63	2.9	63	71	9	160	25	24	25	24	2.00
1048955--1048998	22	2.0	22	100	0	88	45	13	27	13	1.81
1049553--1049583	9	3.4	9	90	0	53	25	12	22	38	1.90
1049636--1049672	9	4.1	9	85	0	56	48	13	8	29	1.71
1049885--1049941	30	1.9	29	82	3	69	19	33	0	47	1.50
1052170--1052221	26	2.0	25	92	3	86	0	38	19	42	1.51
1055161--1055235	13	5.8	13	83	0	96	40	22	9	28	1.85
1055161--1055237	39	2.0	39	86	0	109	40	23	9	27	1.84
1055166--1055247	39	2.1	39	81	0	92	47	19	9	23	1.79
1055403--1055454	24	2.2	24	89	0	77	48	5	0	46	1.26
1060491--1060572	40	2.0	41	83	9	105	45	3	12	39	1.59
1060814--1060881	3	22.3	3	90	3	109	66	1	1	30	1.10
1061069--1061150	40	2.0	41	83	9	105	45	3	12	39	1.59
1063277--1063583	44	7.1	44	71	13	183	28	21	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063271--1063581	129	2.4	129	87	1	444	28	21	19	29	1.98
1063750--1063920	50	3.4	50	73	13	190	25	16	23	34	1.95
1063602--1063989	99	3.9	99	85	4	444	25	20	20	34	1.97
1063656--1063931	49	5.6	49	69	17	169	24	18	21	35	1.96
1063918--1065358	95	15.1	95	91	1	2149	26	22	20	29	1.98
1064378--1065469	50	22.9	50	70	9	368	26	21	20	30	1.98
1070740--1070807	3	22.3	3	90	3	109	66	1	1	30	1.10
1070995--1071076	40	2.0	41	83	9	105	45	3	12	39	1.59
1072122--1072439	163	1.9	164	96	1	595	14	17	38	30	1.89
1078514--1078609	48	2.0	48	91	0	156	19	17	21	40	1.91
1080008--1080038	13	2.4	13	94	0	53	58	0	3	38	1.15
1080097--1080152	16	3.4	16	74	13	51	58	1	23	16	1.47
1080507--1080542	17	2.2	16	90	5	54	75	0	16	8	1.04
1083029--1083118	36	2.4	38	83	3	121	30	40	14	15	1.87
1091317--1091394	21	3.8	21	83	3	88	20	24	12	42	1.87
1100135--1100164	13	2.3	13	100	0	60	60	0	6	33	1.23
1104247--1104292	24	1.9	24	90	0	74	4	17	13	65	1.42
1104247--1104310	24	2.7	24	82	4	67	3	20	9	67	1.33
1105022--1105063	22	1.9	22	85	9	59	30	9	4	54	1.53
1109616--1109684	26	2.7	26	77	4	68	69	10	10	10	1.37
1111990--1112494	128	3.9	128	92	0	839	30	19	24	25	1.98
1113198--1113243	24	1.9	24	90	0	74	4	17	13	65	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1113198--1113261	24	2.7	24	82	4	67	3	20	9	67	1.33
1113999--1114052	23	2.3	23	78	12	58	25	0	7	66	1.17
1116243--1116292	15	3.5	15	72	27	54	20	14	0	66	1.26
1119673--1119703	9	3.4	9	90	0	53	25	12	22	38	1.90
1120812--1120863	23	2.2	23	83	10	61	67	3	5	23	1.29
1121397--1121435	15	2.6	15	83	0	51	35	0	0	64	0.94
1135611--1135785	72	2.5	72	87	5	266	53	13	5	27	1.61
1136025--1136072	18	2.7	18	93	0	78	41	12	10	35	1.77
1139516--1139553	11	3.5	11	92	0	67	47	7	2	42	1.46
1141425--1141546	23	5.3	23	80	0	154	24	20	24	30	1.99
1143416--1143457	19	2.2	20	86	4	59	66	4	0	28	1.12
1147555--1147579	7	3.6	7	100	0	50	28	0	12	60	1.32
1148229--1148266	18	2.1	18	95	0	67	23	28	7	39	1.83
1148697--1148814	25	4.9	25	75	14	131	40	0	13	44	1.50
1148687--1148820	70	1.9	70	96	0	250	39	0	11	47	1.46
1148833--1149006	23	7.7	22	79	10	167	48	21	0	29	1.55
1148833--1149006	45	3.8	44	80	11	190	48	21	0	29	1.55
1152910--1153280	123	3.0	123	91	1	589	32	22	16	29	1.95
1156060--1156201	43	3.3	41	76	13	135	27	30	19	22	1.98

Tables:   1   2   3   4

The End!