genome.fa.s13.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397266.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_20.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7441454

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2072 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7312457--7312605	75	2.0	76	88	4	221	28	18	11	41	1.85
7313106--7313154	21	2.3	21	86	6	64	48	20	6	24	1.72
7313367--7313427	29	2.1	29	100	0	122	42	19	6	31	1.77
7322100--7322143	21	2.0	22	82	4	54	63	6	2	27	1.31
7343335--7343359	6	4.2	6	100	0	50	68	16	0	16	1.22
7355280--7355307	14	2.0	14	100	0	56	42	7	21	28	1.79
7357111--7357331	35	6.3	35	80	8	236	33	9	13	44	1.75
7357111--7357329	71	3.1	71	79	10	245	33	9	13	43	1.75
7357138--7357341	106	1.9	106	85	4	277	34	10	13	42	1.78
7360687--7360746	31	2.0	31	87	9	88	30	11	8	50	1.68
7363738--7363820	18	4.6	18	74	5	87	49	27	8	14	1.72
7363741--7363820	36	2.2	36	84	0	97	50	27	8	13	1.71
7366326--7366374	21	2.4	19	80	12	53	40	12	8	38	1.72
7375966--7376001	18	2.0	18	94	0	63	25	11	41	22	1.86
7382326--7382754	154	2.9	141	77	12	346	39	3	3	53	1.35
7382611--7382662	17	3.1	17	74	0	59	30	1	0	67	1.02
7382469--7382754	154	1.8	157	82	5	366	41	2	3	53	1.28
7382689--7382771	42	1.9	45	85	7	118	44	3	2	49	1.32
7384578--7384631	27	2.0	27	89	3	83	38	1	0	59	1.08
7384622--7384671	25	2.0	25	88	0	73	36	4	0	60	1.16
7386847--7386891	18	2.5	18	88	0	63	31	15	6	46	1.72
7414041--7414104	30	2.1	30	94	0	110	26	17	6	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7415419--7415476	29	2.0	29	89	3	89	44	3	17	34	1.65
7417020--7417063	18	2.4	18	84	0	61	47	0	4	47	1.22
7420754--7420817	34	1.9	33	93	3	110	51	15	3	29	1.59
7425064--7425108	22	2.0	22	82	0	54	17	8	24	48	1.75
7428185--7428218	17	2.0	17	94	0	59	32	0	26	41	1.56
7434053--7434089	19	1.9	19	94	0	65	18	51	2	27	1.60
7436742--7436914	36	4.9	36	79	7	196	43	16	8	31	1.78
7436742--7436914	71	2.5	71	84	4	219	43	16	8	31	1.78
7439184--7439216	13	2.5	13	90	9	50	39	0	18	42	1.50
7439161--7439352	85	2.3	85	86	1	260	40	2	14	43	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!