genome.fa.s13.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397266.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_20.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7441454

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  5  of  18  ( 2072 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1899973--1900030	27	2.1	27	93	0	98	24	32	29	13	1.94
1900081--1900138	15	3.9	15	88	4	91	29	5	34	31	1.79
1900082--1900138	29	1.9	30	92	3	98	29	5	35	29	1.79
1903810--1903873	32	1.9	34	84	12	89	48	3	7	40	1.48
1909981--1910373	211	1.9	212	82	4	499	35	10	16	37	1.83
1920688--1920731	22	2.0	23	81	4	54	45	2	0	52	1.13
1920715--1920773	19	3.3	17	75	17	57	66	0	1	32	1.02
1920737--1920781	23	2.0	23	86	8	65	71	0	2	26	0.98
1920716--1920839	53	2.4	51	75	21	134	64	0	1	33	1.09
1920810--1921132	23	14.3	21	65	26	58	65	0	2	31	1.11
1920734--1920837	53	2.0	51	85	12	140	65	0	1	31	1.10
1920939--1921005	6	11.0	6	73	20	50	68	0	0	31	0.90
1920850--1921295	113	4.0	113	96	3	793	63	0	2	33	1.10
1921052--1921118	6	11.0	6	73	20	50	68	0	0	31	0.90
1920924--1920992	23	3.1	23	71	25	67	65	0	0	34	0.93
1920850--1921295	224	2.0	220	94	4	781	63	0	2	33	1.10
1921221--1921268	15	3.4	15	78	21	50	56	0	4	39	1.19
1920950--1921253	33	8.5	33	66	24	127	63	0	2	33	1.09
1921445--1921498	15	3.6	15	92	0	81	33	25	7	33	1.84
1934057--1934094	2	19.0	2	100	0	76	50	0	0	50	1.00
1940342--1940402	30	2.0	30	100	0	122	16	19	16	47	1.83
1948479--1948522	21	2.1	21	83	4	54	65	6	9	18	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1964044--1964084	16	2.6	16	84	0	55	36	0	0	63	0.95
1975173--1975412	71	3.4	70	77	6	259	25	15	23	35	1.94
1975744--1975776	13	2.5	13	95	0	57	27	21	24	27	1.99
1979367--1979502	31	4.4	30	79	9	123	38	15	14	30	1.88
1980652--1980772	35	3.5	35	75	4	120	19	9	18	53	1.70
1980658--1980750	34	2.7	35	76	14	102	19	7	21	51	1.71
1980989--1981036	15	3.2	15	84	0	60	37	16	18	27	1.92
1982129--1982424	102	2.9	102	76	6	285	47	9	18	24	1.79
1983633--1983661	2	14.5	2	100	0	58	51	0	0	48	1.00
2002546--2002578	11	2.9	12	86	13	52	42	0	0	57	0.98
2002842--2002890	20	2.4	21	76	6	57	38	8	0	53	1.31
2010141--2010183	22	2.0	22	90	0	68	27	9	23	39	1.85
2010208--2010278	22	3.3	22	78	2	72	23	8	21	46	1.78
2010290--2010394	23	4.6	23	80	5	115	34	29	12	23	1.92
2010298--2010392	46	2.1	45	88	2	136	34	28	12	24	1.92
2010387--2010440	21	2.6	21	81	0	72	38	16	18	25	1.92
2013633--2013688	29	1.9	29	85	7	78	32	1	3	62	1.23
2015229--2015258	16	1.9	16	93	6	53	30	0	6	63	1.20
2016482--2016547	33	2.0	33	85	2	89	48	10	12	28	1.74
2025676--2025714	2	20.0	2	89	5	62	48	0	2	48	1.15
2027012--2027046	18	1.9	18	88	0	52	65	2	28	2	1.21
2030135--2030174	5	7.8	5	91	2	53	52	5	0	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2031074--2031098	4	6.2	4	100	0	50	24	48	0	28	1.52
2039768--2039806	15	2.6	15	84	12	53	53	0	7	38	1.30
2045893--2045920	9	3.1	9	100	0	56	89	0	0	10	0.49
2049842--2049866	7	3.6	7	100	0	50	12	48	0	40	1.40
2052501--2052583	27	3.1	26	76	10	78	30	12	21	36	1.90
2052546--2052624	27	2.9	27	72	23	76	37	12	16	32	1.86
2052545--2052663	54	2.2	54	80	8	136	39	14	15	30	1.87
2052639--2052711	27	2.7	27	86	0	101	42	19	9	28	1.82
2055153--2055202	19	2.6	19	93	0	82	48	6	24	22	1.73
2061600--2061727	29	4.7	29	72	18	87	49	6	10	34	1.62
2061631--2061738	29	4.0	27	71	23	75	47	10	8	34	1.68
2061667--2061838	29	6.1	30	68	9	85	43	8	9	37	1.69
2062382--2062412	10	3.1	10	90	0	53	61	0	0	38	0.96
2062400--2062458	15	3.8	16	71	15	52	47	1	0	50	1.11
2063211--2063284	35	2.1	35	100	0	148	33	27	25	13	1.93
2070256--2070414	30	5.4	29	79	10	155	39	13	6	39	1.72
2070276--2070414	61	2.4	58	79	7	156	40	13	7	38	1.72
2070246--2070408	89	1.8	88	84	3	220	38	12	6	41	1.70
2079222--2079272	23	2.2	23	82	0	66	39	27	11	21	1.88
2084992--2085036	23	2.0	23	86	8	65	22	0	6	71	1.09
2085792--2085859	33	2.0	36	85	8	97	38	5	1	54	1.34
2086056--2086153	49	2.0	49	89	0	151	32	21	8	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2092345--2092394	19	2.5	21	81	15	70	42	0	4	54	1.19
2092345--2092394	10	5.1	10	74	13	50	42	0	4	54	1.19
2092345--2092405	20	3.1	20	79	13	72	42	0	4	52	1.23
2094445--2094488	23	1.9	23	85	0	61	40	20	9	29	1.83
2094482--2094850	69	5.4	67	74	9	296	35	22	9	33	1.86
2094570--2094659	23	3.9	23	76	5	92	40	22	6	31	1.80
2094620--2094668	23	2.1	23	92	0	80	44	22	8	24	1.79
2094487--2094848	138	2.6	139	83	3	446	35	22	9	32	1.87
2094868--2094921	23	2.3	23	83	0	72	31	20	12	35	1.90
2095251--2095318	26	2.6	26	81	6	66	51	7	14	26	1.68
2099193--2099385	94	2.1	94	86	5	266	33	27	14	24	1.94
2115204--2115379	87	2.0	87	95	0	316	32	18	21	27	1.96
2117346--2117383	15	2.6	14	87	4	58	36	0	0	63	0.95
2117342--2117392	14	3.6	14	77	15	59	41	0	0	58	0.98
2117473--2117523	25	2.0	25	88	0	75	49	13	19	17	1.80
2125564--2125686	59	2.1	59	86	3	167	36	12	14	36	1.84
2126822--2126848	2	13.5	2	100	0	54	51	0	0	48	1.00
2125764--2127169	699	2.0	699	91	2	2282	41	11	12	33	1.80
2138225--2138254	7	4.4	7	95	4	53	16	40	30	13	1.87
2142390--2142644	138	1.8	138	82	3	325	46	18	19	16	1.85
2146596--2146666	30	2.4	30	82	0	88	12	39	30	16	1.86
2146679--2146736	30	2.0	29	86	3	80	6	41	32	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2156495--2156545	9	5.7	9	80	0	57	1	11	33	52	1.49
2159229--2159270	22	1.9	22	85	9	59	47	0	0	52	1.00
2171094--2171147	19	2.8	19	74	2	54	44	0	0	55	0.99
2175158--2175207	25	2.1	23	82	14	57	54	10	12	24	1.67
2175302--2175518	109	2.0	110	87	0	319	54	20	10	14	1.69
2179008--2179046	21	1.9	20	85	15	53	33	7	12	46	1.71
2179703--2179741	18	2.1	19	85	9	53	51	2	5	41	1.38
2212770--2212812	22	2.0	22	85	0	59	58	0	0	41	0.98
2213163--2213218	17	3.2	17	78	14	60	53	0	0	46	1.00
2236905--2236957	16	3.1	17	73	26	58	50	0	0	49	1.00
2236903--2237004	41	2.7	38	75	17	106	46	1	0	51	1.12
2237394--2237430	20	1.9	20	94	5	67	48	0	0	51	1.00
2249281--2249353	27	2.6	27	76	4	74	67	17	0	15	1.24
2250616--2250666	15	3.1	16	75	11	50	45	0	0	54	0.99
2251698--2251723	2	13.0	2	100	0	52	50	0	0	50	1.00
2253854--2253881	6	4.7	6	100	0	56	0	0	14	85	0.59
2254232--2254264	2	16.5	2	100	0	66	0	51	0	48	1.00
2257376--2257402	12	2.2	12	100	0	54	44	7	22	25	1.79
2258915--2258951	3	12.3	3	94	0	65	67	2	0	29	1.04
2259581--2259614	10	3.4	10	83	0	50	47	0	0	52	1.00
2260605--2260640	2	18.0	2	100	0	72	50	0	0	50	1.00
2265274--2265312	14	2.9	14	88	7	55	66	5	0	28	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2276957--2277014	30	2.0	30	86	3	82	32	0	1	65	1.03
2277123--2277158	19	1.9	18	88	5	54	52	0	0	47	1.00
2278778--2278816	17	2.3	17	81	0	51	43	2	2	51	1.29
2294465--2294735	128	2.1	128	88	0	398	35	14	18	32	1.90
2294745--2294789	24	1.9	23	90	4	72	80	2	13	4	0.97
2295669--2295704	2	18.0	2	94	0	63	47	0	2	50	1.15
2295725--2295764	21	1.9	21	89	0	62	5	12	12	70	1.33
2296943--2296973	7	4.4	7	100	0	62	41	29	0	29	1.56
2305030--2305064	4	8.8	4	87	0	52	45	22	2	28	1.67
2305060--2305090	16	1.9	16	93	0	53	48	9	3	38	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18