genome.fa.s13.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397266.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_20.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7441454

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  7  of  18  ( 2072 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2706390--2706428	2	19.5	2	94	0	69	48	2	0	48	1.15
2714471--2714516	23	2.0	24	86	4	67	36	6	2	54	1.39
2714474--2714532	24	2.5	24	73	13	59	37	8	1	52	1.42
2714981--2715058	34	2.3	35	93	2	131	42	6	8	42	1.62
2726580--2726627	18	2.6	18	93	6	78	2	10	47	39	1.49
2726578--2726627	20	2.5	20	93	0	82	2	10	48	40	1.48
2726575--2726612	2	19.0	2	94	0	58	0	5	50	44	1.24
2739959--2740010	26	2.0	27	84	3	70	44	7	11	36	1.70
2740163--2740214	26	2.0	26	88	3	77	28	5	21	44	1.75
2740059--2740214	27	5.8	27	75	3	91	36	5	15	42	1.71
2747740--2747777	2	19.0	2	88	0	58	47	5	47	0	1.24
2748556--2748601	24	2.0	23	83	12	58	63	17	2	17	1.42
2748681--2748706	12	2.2	12	100	0	52	50	0	0	50	1.00
2748784--2748817	17	2.0	17	88	0	50	50	11	11	26	1.73
2752188--2752236	14	3.1	16	83	16	59	51	0	0	48	1.00
2756998--2757022	10	2.5	10	100	0	50	40	0	0	60	0.97
2756991--2757048	25	2.3	25	82	11	66	39	1	0	58	1.08
2767354--2767387	13	2.4	15	90	9	54	23	11	0	64	1.26
2767664--2767698	18	1.9	18	94	0	61	40	17	11	31	1.85
2768873--2768929	2	28.5	2	85	0	78	42	0	5	52	1.24
2786431--2786461	16	1.9	16	93	0	53	51	16	12	19	1.76
2790239--2790338	49	2.0	49	83	7	123	41	10	13	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2794142--2794185	22	2.0	22	95	0	79	34	4	18	43	1.70
2797876--2797915	20	2.0	20	95	0	71	57	0	0	42	0.98
2797949--2798011	29	2.2	29	88	0	99	38	1	1	58	1.17
2803476--2803809	176	1.9	176	91	1	544	38	17	8	35	1.80
2804856--2804883	2	14.0	2	100	0	56	50	0	0	50	1.00
2808740--2808780	20	2.0	20	85	4	55	41	4	0	53	1.22
2809530--2809567	18	2.1	18	100	0	76	31	10	31	26	1.90
2823275--2823312	20	1.9	20	88	0	58	42	0	2	55	1.14
2835793--2835855	30	2.1	30	85	5	83	33	7	6	52	1.56
2839327--2839361	16	2.2	16	100	0	70	54	0	22	22	1.45
2840487--2840614	42	3.1	42	63	17	115	37	14	7	40	1.74
2840393--2840701	159	1.9	160	83	4	401	41	11	7	39	1.70
2840393--2840701	80	3.9	80	87	3	392	41	11	7	39	1.70
2847206--2847281	23	3.3	23	88	3	109	21	30	18	30	1.97
2858253--2858282	12	2.5	12	100	0	60	33	30	16	20	1.94
2886800--2887082	27	10.4	27	74	5	196	38	14	8	38	1.76
2886800--2887082	55	5.2	55	73	5	200	38	14	8	38	1.76
2886799--2887082	83	3.5	83	78	5	276	38	14	8	38	1.76
2892521--2892584	33	1.9	33	93	0	110	45	3	15	35	1.62
2894783--2894811	1	29.0	1	100	0	58	0	100	0	0	0.00
2904621--2904650	15	2.0	15	100	0	60	46	6	0	46	1.29
2908501--2908535	18	1.9	18	94	0	61	42	8	28	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2917240--2917287	22	2.2	21	85	3	60	50	2	12	35	1.52
2918130--2918169	20	2.0	21	85	14	57	45	7	7	40	1.61
2933822--2934061	126	1.9	124	86	3	338	44	12	12	30	1.80
2934030--2934081	26	1.9	27	84	7	70	46	5	13	34	1.67
2934160--2934211	26	2.0	27	84	3	70	48	11	5	34	1.63
2936526--2936813	144	2.0	144	90	2	452	31	16	14	36	1.90
2938029--2938144	54	2.2	53	84	7	153	16	52	7	23	1.69
2940440--2940473	15	2.3	15	89	0	50	23	0	41	35	1.55
2942038--2942101	30	2.1	30	88	0	92	26	15	9	48	1.75
2955622--2955667	17	2.6	17	80	12	58	34	2	6	56	1.37
2960123--2961225	62	18.0	62	76	5	742	33	17	14	34	1.90
2960330--2960434	31	3.4	31	70	19	83	32	17	15	35	1.91
2960121--2961227	124	9.0	124	76	4	825	33	17	14	34	1.90
2960119--2961225	186	6.0	185	75	6	832	33	17	14	34	1.90
2960584--2960681	31	3.2	29	71	18	83	35	18	9	36	1.83
2960999--2961098	31	3.2	30	68	16	78	30	22	15	33	1.94
2961140--2961225	31	2.8	30	70	15	77	33	18	10	37	1.85
2974355--2974398	19	2.3	19	92	0	70	20	29	2	47	1.62
2975841--2975952	57	1.9	58	89	1	172	40	17	7	34	1.77
2981364--2981400	15	2.5	15	95	0	65	29	8	29	32	1.86
2984061--2984102	2	21.5	2	95	4	77	50	0	0	50	1.00
3004498--3004565	35	1.9	35	90	0	109	27	10	11	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3016317--3016377	28	2.2	28	100	0	122	19	18	13	49	1.79
3016317--3016385	28	2.4	28	95	2	111	21	17	11	49	1.78
3017322--3017377	27	2.1	27	100	0	112	32	14	25	28	1.94
3018809--3018921	49	2.3	49	83	3	129	30	15	22	32	1.94
3018831--3018955	49	2.6	49	78	0	142	28	16	20	34	1.95
3019111--3019218	49	2.2	49	81	0	117	22	13	24	39	1.90
3019205--3019285	34	2.5	34	90	6	123	32	12	19	35	1.89
3019805--3019841	19	1.9	19	94	0	65	24	21	24	29	1.99
3019693--3019846	76	2.0	76	93	1	265	17	21	18	42	1.89
3019830--3019877	24	2.0	24	100	0	96	8	29	25	37	1.85
3022542--3022597	24	2.3	24	81	6	69	37	10	10	41	1.75
3022697--3022731	18	1.9	18	88	0	52	37	5	2	54	1.39
3031904--3031978	1	75.0	1	94	0	132	2	97	0	0	0.18
3038455--3038529	38	2.0	40	86	7	111	42	8	5	44	1.56
3038773--3038807	18	1.9	19	88	11	56	11	11	0	77	1.00
3043740--3043784	22	2.1	21	83	4	54	44	0	2	53	1.13
3043740--3043780	21	2.0	21	85	0	55	46	0	2	51	1.14
3043855--3043884	7	4.1	7	95	4	51	56	3	0	40	1.16
3058632--3058706	29	2.7	29	81	4	82	49	6	2	41	1.43
3058613--3058694	29	2.8	30	79	3	94	48	8	4	37	1.55
3060001--3060046	21	2.1	22	88	4	67	60	0	0	39	0.97
3063285--3063313	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3064841--3064932	27	3.4	27	96	3	168	38	10	7	43	1.68
3067644--3067681	20	1.9	20	88	0	58	47	10	13	28	1.76
3068374--3068457	41	2.0	41	95	0	150	41	15	28	14	1.86
3074689--3074789	28	3.4	28	71	12	85	46	7	12	32	1.71
3101490--3101676	90	2.1	90	81	4	216	38	18	22	19	1.93
3110289--3110442	84	1.8	84	84	2	211	31	18	18	31	1.95
3112646--3112696	26	2.0	26	88	0	75	43	11	9	35	1.75
3118420--3118466	25	1.9	24	82	4	58	27	25	2	44	1.65
3123157--3123319	82	2.0	82	88	0	245	36	19	15	28	1.93
3129347--3129385	6	6.5	6	96	0	60	48	10	0	41	1.37
3142540--3142576	3	12.3	3	100	0	74	0	32	0	67	0.91
3147463--3148072	301	2.0	301	98	0	1175	34	19	15	30	1.93
3149871--3149967	2	48.5	2	83	0	95	48	7	3	41	1.46
3150529--3150563	16	2.2	16	100	0	70	31	20	11	37	1.88
3153029--3153063	2	17.5	2	93	0	61	48	2	0	48	1.16
3154157--3154197	2	21.5	2	80	9	50	2	46	0	51	1.14
3174454--3174498	2	23.0	2	95	4	83	48	0	0	51	1.00
3177124--3177166	22	1.9	23	85	4	61	32	6	4	55	1.47
3178250--3178283	5	6.6	5	86	6	50	76	2	20	0	0.92
3180082--3180187	51	2.1	49	83	8	151	35	11	32	20	1.88
3180093--3180198	51	2.1	51	94	0	185	35	10	32	21	1.87
3191542--3191580	2	19.5	2	94	0	69	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3213316--3213340	2	12.5	2	100	0	50	48	0	0	52	1.00
3214321--3214438	61	1.9	62	82	1	148	34	6	14	44	1.72
3214720--3214779	21	2.8	21	74	2	57	45	18	6	30	1.75
3214732--3214827	22	4.4	22	78	2	77	46	17	7	28	1.74
3214773--3214838	22	3.0	22	79	0	69	48	15	7	28	1.72
3219751--3219786	2	17.5	2	94	5	63	47	0	50	2	1.15
3222590--3222665	38	2.0	38	97	0	143	38	17	23	21	1.93
3233107--3233161	28	2.0	28	92	0	92	61	12	1	23	1.40
3239042--3239079	18	2.1	18	95	0	67	34	7	5	52	1.53
3241765--3241869	55	1.9	57	86	9	146	65	0	2	30	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18