genome.fa.s13.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397266.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_20.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7441454

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  8  of  18  ( 2072 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3241845--3241929	33	2.5	33	83	9	93	67	0	4	28	1.11
3241962--3242058	21	4.2	23	73	20	87	65	1	0	32	0.99
3241962--3242035	22	3.4	23	77	20	79	67	1	0	31	0.99
3241884--3242111	113	2.0	113	89	5	354	61	0	3	34	1.17
3241976--3242056	28	3.1	27	78	16	84	66	1	0	32	0.99
3242256--3242299	15	2.9	15	93	0	79	31	25	6	36	1.82
3242467--3242509	22	2.0	22	90	0	68	44	9	4	41	1.57
3243322--3243369	21	2.3	21	82	10	64	60	4	6	29	1.40
3244036--3244077	22	1.9	22	85	0	57	47	4	2	45	1.36
3250183--3250249	28	2.3	28	74	5	71	53	0	0	46	1.00
3250184--3250247	30	2.3	28	76	10	69	51	0	0	48	1.00
3252530--3252569	13	2.9	13	88	7	53	30	0	2	67	1.04
3252544--3252590	16	2.9	16	75	6	51	36	2	0	61	1.08
3257260--3257737	108	4.5	106	81	4	419	34	11	8	44	1.72
3257316--3257737	108	3.9	107	83	4	422	35	11	8	44	1.71
3257316--3257737	213	2.0	216	83	5	543	35	11	8	44	1.71
3273623--3273724	50	2.1	49	96	1	186	36	13	11	38	1.82
3275683--3275712	16	1.9	15	93	6	51	53	6	20	20	1.67
3286575--3286617	3	14.3	3	100	0	86	67	0	0	32	0.91
3289198--3289227	2	15.5	2	93	6	53	46	0	0	53	1.00
3294789--3294852	33	1.9	34	93	3	112	25	9	15	50	1.74
3298688--3298722	17	2.2	17	90	10	56	65	5	14	14	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3305009--3305056	15	3.2	15	87	0	69	39	29	8	22	1.83
3307883--3308045	87	1.8	88	90	6	267	49	17	4	28	1.65
3314226--3314285	25	2.5	24	80	20	79	38	0	0	61	0.96
3314235--3314296	31	2.0	31	87	3	90	37	0	0	62	0.95
3336717--3336745	15	1.9	15	100	0	58	58	0	0	41	0.98
3336981--3337037	27	2.1	27	90	0	87	35	3	0	61	1.13
3337313--3337381	30	2.3	29	80	9	75	69	0	2	27	1.02
3342095--3342129	2	17.5	2	87	0	52	48	2	0	48	1.16
3344703--3344748	23	2.0	23	83	8	58	56	0	0	43	0.99
3351347--3351391	23	2.0	23	82	8	56	8	26	11	53	1.65
3351763--3351835	29	2.6	29	84	4	87	39	5	6	47	1.53
3351876--3351990	45	2.6	45	80	0	131	32	9	16	41	1.81
3351960--3352012	24	2.2	24	96	0	97	32	7	15	45	1.74
3351986--3352087	45	2.3	45	81	3	125	36	12	9	41	1.77
3371446--3371482	2	19.0	2	94	5	67	0	51	0	48	1.00
3376282--3376309	7	4.0	7	100	0	56	42	28	28	0	1.56
3376492--3376541	23	2.2	23	85	7	66	42	0	0	58	0.98
3377356--3377412	27	2.2	27	84	6	73	50	1	1	45	1.22
3377375--3377837	208	2.2	207	80	9	486	40	5	3	47	1.45
3378167--3378249	30	2.8	29	85	5	112	61	1	0	37	1.04
3378190--3378254	24	2.6	24	78	14	69	63	0	0	36	0.95
3382460--3382535	28	2.6	29	81	4	91	35	0	1	63	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3382635--3382672	20	1.9	20	84	10	51	28	5	23	42	1.76
3385898--3385927	2	15.0	2	92	0	51	46	0	0	53	1.00
3388323--3388371	21	2.3	22	86	10	66	30	4	0	65	1.11
3388324--3388371	22	2.3	21	89	7	71	31	4	0	64	1.12
3388363--3388419	30	1.9	30	88	0	87	33	17	0	49	1.47
3399033--3399077	23	2.0	23	83	16	58	28	13	4	53	1.59
3400150--3400192	18	2.5	17	81	14	52	60	0	4	34	1.17
3416926--3416951	2	13.0	2	100	0	52	50	0	0	50	1.00
3422500--3422525	2	13.0	2	100	0	52	0	50	0	50	1.00
3426458--3426487	11	2.7	11	89	0	51	36	33	0	30	1.58
3427876--3427901	12	2.2	12	100	0	52	7	0	42	50	1.31
3433059--3433135	41	1.9	41	94	2	138	38	23	19	18	1.93
3440876--3440934	22	2.6	22	86	10	75	35	0	1	62	1.05
3441055--3441100	18	2.3	21	75	17	53	2	19	2	76	1.00
3441059--3441094	18	1.9	19	88	5	56	2	22	2	72	1.11
3441260--3441296	16	2.2	17	90	4	58	35	2	0	62	1.10
3444523--3444596	27	2.8	27	87	2	105	45	6	10	36	1.66
3446034--3446243	108	1.9	108	91	1	341	42	3	17	36	1.65
3447537--3447660	31	4.2	29	71	22	100	66	0	1	30	1.06
3447541--3447998	27	17.0	25	66	23	86	64	0	2	32	1.10
3447627--3447838	21	10.3	21	67	18	56	65	0	2	32	1.09
3447647--3447933	11	26.1	11	66	21	79	65	0	2	31	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3447630--3447992	12	29.9	12	66	25	87	64	0	2	32	1.10
3447537--3447707	87	2.0	86	80	14	192	67	0	2	29	1.07
3447631--3447797	87	1.9	87	80	11	191	64	0	2	32	1.11
3447668--3448003	27	12.1	26	71	18	177	63	0	2	33	1.09
3447622--3447773	72	2.2	69	82	8	173	64	0	2	32	1.12
3447758--3447824	6	11.0	6	73	20	50	68	0	0	31	0.90
3447674--3448003	111	2.9	111	94	4	574	63	0	2	33	1.10
3447777--3447935	33	4.4	34	69	23	103	66	0	2	30	1.05
3447743--3447929	21	8.5	22	68	24	85	65	0	2	32	1.04
3447880--3447960	33	2.4	33	83	6	101	66	0	2	30	1.05
3448153--3448206	15	3.6	15	92	0	81	33	25	7	33	1.84
3448336--3448427	27	3.5	26	74	15	80	32	23	20	22	1.98
3448302--3448427	53	2.4	53	77	2	137	31	23	21	23	1.98
3448439--3448507	26	2.7	26	78	13	79	36	15	20	27	1.93
3449368--3449483	60	1.9	60	84	3	153	33	26	6	32	1.83
3450427--3450465	20	1.9	21	89	5	62	12	20	7	58	1.58
3454351--3454419	22	3.1	21	70	15	59	47	0	7	44	1.30
3455708--3455863	5	32.2	5	81	16	131	42	17	0	39	1.49
3455708--3455863	9	18.1	9	80	12	120	42	17	0	39	1.49
3455707--3455862	32	5.1	32	78	16	136	43	17	0	39	1.49
3455713--3455858	25	6.0	25	80	13	162	43	17	0	39	1.49
3455731--3455862	4	31.2	4	71	16	65	43	18	0	37	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3455759--3455877	46	2.7	48	72	21	84	42	18	0	38	1.50
3465448--3465982	173	3.1	173	86	2	689	37	11	19	32	1.87
3466299--3466342	22	2.0	22	90	0	70	25	6	11	56	1.58
3468888--3469111	55	4.1	54	83	2	207	39	10	12	37	1.77
3468888--3469112	82	2.7	81	78	10	215	40	10	12	37	1.77
3468995--3469069	28	2.7	27	83	4	96	48	9	4	38	1.54
3468888--3469111	27	8.2	27	74	4	171	39	10	12	37	1.77
3470087--3470115	15	1.9	15	100	0	58	27	24	20	27	1.99
3470595--3471047	228	2.0	228	90	0	719	23	25	15	35	1.93
3478824--3478849	4	6.5	4	100	0	52	50	23	0	26	1.50
3483422--3483446	3	8.3	3	100	0	50	68	0	0	32	0.90
3503521--3503574	21	2.3	24	87	12	78	3	40	3	51	1.37
3503522--3503574	23	2.2	25	90	6	83	3	41	3	50	1.38
3509322--3509438	30	3.9	30	100	0	234	19	26	20	33	1.97
3513660--3513690	2	15.5	2	93	0	53	45	0	3	51	1.17
3515680--3515774	27	3.4	27	81	13	104	32	16	9	41	1.81
3520259--3520310	20	2.6	20	84	6	70	19	51	21	7	1.71
3520434--3520517	41	2.1	41	82	10	102	39	3	2	54	1.31
3528284--3528338	23	2.5	21	77	11	56	65	0	0	34	0.93
3556930--3557070	69	2.0	69	91	0	228	23	14	17	44	1.85
3561674--3561880	104	2.0	104	99	0	405	19	16	18	45	1.86
3571349--3571597	80	3.1	80	82	5	272	34	21	10	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3571349--3571572	81	2.8	80	83	4	256	33	22	10	33	1.89
3572782--3572824	16	2.6	16	85	3	50	72	6	2	18	1.19
3572795--3572829	16	2.3	15	90	5	52	71	11	2	14	1.25
3574634--3574703	28	2.5	28	100	0	140	34	21	14	30	1.93
3574769--3574838	25	2.7	25	95	4	122	28	8	11	51	1.67
3574793--3574846	25	2.2	25	86	0	72	35	9	12	42	1.75
3579537--3579573	2	18.5	2	100	0	74	51	0	0	48	1.00
3582925--3583002	40	1.9	42	84	10	108	41	8	10	39	1.71
3587009--3587045	18	2.1	18	100	0	74	32	16	13	37	1.87
3588803--3588838	2	18.0	2	100	0	72	50	0	50	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18