genome.fa.s17.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397270.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_55.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4719911

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1158 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4195930--4195983	16	3.3	16	76	20	58	61	0	0	38	0.96
4224708--4224774	29	2.3	28	80	7	80	26	7	4	61	1.42
4231766--4231796	16	1.9	16	93	0	53	48	9	3	38	1.52
4232670--4232730	19	3.2	19	100	0	122	32	21	16	29	1.95
4232745--4232853	34	3.2	33	78	7	103	35	25	14	23	1.93
4232765--4233192	132	3.3	132	78	5	385	38	21	15	24	1.92
4233115--4233200	34	2.5	34	76	0	91	38	22	17	22	1.93
4234782--4235109	162	2.0	161	90	0	521	30	13	15	39	1.87
4235580--4235659	31	2.6	31	95	0	142	27	16	36	20	1.93
4235569--4235885	96	3.3	95	82	2	289	31	14	29	23	1.94
4235654--4235777	31	3.9	31	70	14	90	30	15	29	24	1.95
4235488--4235755	127	2.1	127	84	0	356	31	15	29	23	1.95
4235846--4235912	31	2.2	31	83	0	80	31	11	26	29	1.92
4235613--4235955	96	3.6	96	80	5	365	31	14	28	25	1.95
4236065--4236132	31	2.2	31	83	0	82	36	19	19	25	1.94
4265137--4265197	30	2.0	30	93	0	104	19	13	36	31	1.90
4275212--4275249	19	2.0	19	100	0	76	10	36	10	42	1.74
4300201--4300250	12	4.2	12	84	0	73	24	22	48	6	1.73
4300192--4300247	24	2.3	24	87	0	85	17	25	50	7	1.72
4320536--4320578	8	5.4	8	80	0	50	39	2	13	44	1.57
4322913--4323092	49	3.8	48	78	9	206	31	15	15	38	1.88
4322907--4323090	94	1.9	97	87	4	275	29	15	15	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4336184--4336315	54	2.5	54	82	1	158	30	17	15	37	1.90
4336301--4336374	25	3.0	25	83	0	94	28	20	16	35	1.94
4347918--4347971	22	2.6	19	78	16	54	31	5	11	51	1.60
4347929--4347974	22	2.1	22	88	8	67	30	6	8	54	1.56
4347941--4347988	22	2.2	22	84	0	60	31	6	10	52	1.60
4348170--4348234	22	3.0	22	81	0	76	50	7	9	32	1.63
4348574--4348610	16	2.4	16	90	4	58	45	2	0	51	1.15
4368649--4370571	550	3.5	545	79	7	1803	25	14	17	43	1.86
4368893--4370571	277	6.1	277	79	6	1694	25	14	17	43	1.86
4370304--4371194	468	1.9	468	97	0	1692	29	13	17	40	1.87
4381274--4381323	22	2.3	22	89	0	82	36	4	10	50	1.55
4381315--4381394	23	3.5	23	74	5	63	33	12	22	31	1.91
4412077--4412103	4	6.8	4	100	0	54	48	25	0	25	1.52
4414409--4414442	6	5.7	6	96	0	59	35	44	0	20	1.52
4417174--4417228	28	2.0	28	92	7	94	27	21	3	47	1.68
4424963--4425165	100	2.0	101	83	0	255	35	12	23	28	1.92
4427280--4427312	2	16.5	2	100	0	66	51	0	0	48	1.00
4434306--4434373	28	2.4	29	78	7	77	54	0	2	42	1.15
4434359--4434466	42	2.7	40	80	12	121	43	0	2	52	1.22
4434424--4434476	23	2.3	22	81	9	61	43	1	1	52	1.23
4443707--4443991	156	1.8	152	83	10	373	23	21	11	43	1.84
4450272--4450834	112	5.0	112	92	0	885	32	17	20	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4471625--4471666	4	10.5	4	94	0	66	23	30	0	45	1.53
4489605--4489643	19	2.0	20	85	14	55	43	25	5	25	1.75
4498993--4499021	15	1.9	15	100	0	58	34	6	13	44	1.71
4503225--4503250	4	6.5	4	100	0	52	50	23	0	26	1.50
4535349--4535395	20	2.3	20	78	10	51	61	10	19	8	1.53
4545796--4546048	123	2.1	123	88	1	373	23	25	13	37	1.92
4548087--4548119	15	2.1	16	88	5	50	3	24	0	72	0.98
4557857--4557882	6	4.3	6	100	0	52	15	15	34	34	1.89
4564008--4564033	2	13.0	2	100	0	52	50	0	0	50	1.00
4587980--4588045	15	4.2	17	71	24	56	74	0	0	25	0.82
4587951--4588030	38	2.0	40	85	4	110	63	0	0	36	0.94
4587991--4588049	30	2.0	30	87	12	86	71	0	0	28	0.87
4588117--4588342	29	7.8	29	66	24	104	64	0	1	33	1.08
4588123--4588319	58	3.6	57	72	17	175	64	0	1	32	1.06
4588203--4588268	22	2.9	24	76	17	77	71	0	0	28	0.87
4588216--4588345	59	2.2	59	83	8	156	63	0	0	34	1.05
4596141--4596219	30	2.6	30	92	4	133	16	15	27	40	1.88
4612163--4612204	2	22.0	2	80	9	52	47	4	0	47	1.23
4612502--4612527	3	8.7	3	100	0	52	34	34	0	30	1.58
4621401--4621611	105	2.0	105	95	1	379	19	39	15	26	1.91
4631117--4631573	222	2.1	222	91	0	734	26	24	19	29	1.99
4642835--4642938	40	2.6	40	92	1	172	37	22	21	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4653489--4653513	2	12.5	2	100	0	50	52	0	0	48	1.00
4660670--4660728	30	2.0	30	93	0	100	32	8	18	40	1.81
4661094--4661123	5	6.0	5	100	0	60	40	0	60	0	0.97
4668646--4668724	33	2.4	33	91	0	131	16	24	29	30	1.96
4684708--4684792	6	14.2	6	97	0	143	17	17	34	30	1.94
4685401--4685428	5	5.6	5	100	0	56	60	0	0	39	0.97
4686875--4686953	41	1.9	41	92	5	133	48	15	10	26	1.76
4694826--4694933	54	2.0	53	94	1	189	37	9	17	35	1.82
4703087--4703187	26	3.9	26	81	11	118	38	18	5	36	1.76
4703087--4703211	24	4.9	25	75	13	94	39	19	5	36	1.75
4703087--4703185	50	2.0	51	84	6	130	37	19	6	37	1.76
4703077--4703211	26	5.2	26	76	12	98	43	17	5	33	1.71

Tables:   1   2   3   4   5   6   7   8   9   10

The End!