genome.fa.s17.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397270.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_55.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4719911

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1158 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451287--451329	14	2.9	15	80	13	54	53	4	2	39	1.34
453599--453668	33	2.1	33	83	0	86	41	8	11	38	1.72
455461--455490	12	2.5	12	94	0	51	70	0	30	0	0.88
459628--459683	28	2.1	26	83	6	67	42	10	7	39	1.67
459632--459689	27	2.1	27	81	9	64	43	12	6	37	1.69
468126--468161	3	12.0	3	100	0	72	66	0	0	33	0.92
470499--470546	20	2.4	20	85	0	60	31	2	0	66	1.03
473142--473217	30	2.6	30	77	10	86	43	6	10	39	1.65
475834--475929	49	1.9	51	89	4	151	16	44	19	18	1.87
476692--476732	21	1.9	22	85	5	57	41	9	7	41	1.66
478407--478469	28	2.2	28	85	0	81	28	11	15	44	1.81
478517--478583	26	2.6	26	92	0	107	32	23	5	37	1.79
478537--478625	26	3.4	25	78	6	79	33	22	6	37	1.81
478666--478778	59	1.9	59	85	3	156	35	8	15	40	1.78
479329--479358	12	2.5	12	94	0	51	53	6	0	40	1.27
480396--480474	29	2.8	29	76	16	78	37	1	1	59	1.14
486975--487036	30	2.0	32	93	6	110	24	3	20	51	1.62
502979--503055	39	2.0	39	89	0	118	29	24	24	20	1.99
510010--510062	27	2.0	27	92	0	88	30	11	16	41	1.84
521048--521094	10	4.3	12	84	15	59	44	0	4	51	1.21
522645--522698	28	1.9	28	96	0	99	48	22	9	20	1.78
524109--524350	74	3.3	74	83	3	308	23	19	16	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533283--533372	32	2.8	32	86	1	126	30	4	12	53	1.58
533756--533781	6	4.3	6	100	0	52	61	0	0	38	0.96
534326--534391	31	2.1	31	85	0	87	6	34	4	54	1.45
537578--537611	11	3.0	11	91	4	50	32	8	17	41	1.80
543851--543929	23	3.4	23	74	15	74	0	41	0	58	0.98
543874--543926	13	4.6	12	80	19	60	0	41	0	58	0.98
543866--543923	21	2.8	20	84	7	64	0	43	0	56	0.99
548039--548238	100	2.0	100	90	1	312	36	9	18	35	1.83
556150--556225	22	3.5	22	90	3	91	19	13	21	46	1.84
556531--556600	22	3.2	22	69	20	56	27	10	22	40	1.86
557733--557758	8	3.2	8	100	0	52	42	0	23	34	1.54
564425--564455	10	3.1	10	100	0	62	32	19	19	29	1.96
564638--564706	10	6.8	10	75	8	59	69	0	1	28	0.97
564592--564709	5	24.0	5	67	16	50	68	0	2	27	1.08
564699--564784	33	2.6	33	86	1	109	68	0	2	29	1.02
564728--564796	33	2.3	28	71	21	66	66	1	4	27	1.19
565009--565062	15	3.6	15	92	0	90	37	27	3	31	1.75
565006--565062	30	1.9	30	96	0	105	35	28	5	31	1.79
572740--572769	2	15.0	2	100	0	60	50	0	0	50	1.00
574991--575034	2	22.5	2	81	4	54	50	6	0	43	1.29
579709--579772	29	2.2	29	83	10	78	40	4	1	53	1.31
580167--580193	4	6.8	4	100	0	54	0	22	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587344--587380	17	2.1	18	90	5	58	59	0	0	40	0.97
592702--592726	13	1.9	13	100	0	50	72	16	12	0	1.13
594618--594650	2	16.5	2	100	0	66	48	0	0	51	1.00
606406--606430	2	12.5	2	100	0	50	52	0	0	48	1.00
620462--620646	70	2.7	69	81	1	199	28	20	17	32	1.96
622230--622306	33	2.3	33	86	0	100	28	11	27	32	1.92
627745--627802	27	2.1	29	81	12	68	41	13	6	37	1.72
637975--638106	69	1.9	69	84	3	176	34	9	17	38	1.81
641296--641342	21	2.2	22	84	3	60	70	0	29	0	0.88
642636--642692	25	2.2	26	78	9	62	31	17	24	26	1.97
658872--658908	2	18.5	2	100	0	74	48	0	0	51	1.00
659226--659258	14	2.3	15	89	5	50	72	0	24	3	0.98
664538--664681	70	2.0	71	94	1	254	31	28	20	19	1.97
668626--669036	205	2.0	205	91	2	673	39	19	14	26	1.90
676779--676804	3	8.7	3	100	0	52	34	0	30	34	1.58
696325--696390	33	2.0	34	90	3	107	50	4	10	34	1.58
696404--696430	12	2.2	12	100	0	54	22	7	25	44	1.79
701286--701315	10	3.0	10	95	0	51	50	10	3	36	1.53
701639--701681	15	2.9	15	86	13	54	60	0	0	39	0.97
701893--701960	35	1.9	35	85	5	93	55	8	4	30	1.50
703233--703343	35	3.1	35	71	5	98	44	14	19	21	1.86
712876--712923	25	1.9	25	95	0	87	31	4	10	54	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712881--712935	25	2.2	25	83	0	65	30	5	16	47	1.69
714886--715030	35	4.1	36	74	12	102	46	13	6	34	1.68
714886--715030	71	2.0	71	84	2	184	46	13	6	34	1.68
716361--716403	19	2.3	19	87	0	59	44	6	9	39	1.64
729824--729959	28	4.6	29	77	11	143	40	8	11	39	1.71
731266--731307	20	2.1	20	86	8	59	40	19	4	35	1.72
745312--745338	2	13.5	2	100	0	54	48	0	0	51	1.00
746203--746248	22	2.1	22	84	8	58	0	36	0	63	0.95
750122--750148	12	2.2	12	100	0	54	48	18	7	25	1.74
753259--753306	21	2.3	21	85	0	60	25	14	14	45	1.83
753267--753312	21	2.2	21	92	0	74	23	10	15	50	1.75
754030--754067	19	2.2	17	86	13	51	21	26	2	50	1.62
757753--758046	58	5.0	56	73	15	173	41	10	11	37	1.75
757753--757861	28	3.9	28	84	4	139	41	12	10	35	1.77
757823--757896	37	2.0	38	89	2	114	41	9	12	36	1.75
757860--758086	28	7.9	28	78	10	178	39	9	12	38	1.76
757798--757927	66	2.0	65	85	7	174	40	10	13	36	1.78
757860--758048	86	2.2	87	86	6	260	42	8	11	37	1.73
757860--758055	58	3.4	58	83	2	243	40	9	11	38	1.74
763672--763728	29	2.0	29	82	6	71	29	10	7	52	1.62
766287--766349	31	2.0	31	93	6	110	44	17	23	14	1.85
766543--766584	2	21.0	2	90	0	66	0	54	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766590--766629	16	2.5	16	87	0	53	40	50	5	5	1.46
767601--767668	33	2.1	33	97	0	127	19	19	13	48	1.81
773813--774323	47	10.9	47	77	5	430	26	17	31	24	1.97
773960--774087	23	5.5	23	72	17	93	24	17	34	24	1.96
773983--774064	24	3.5	24	76	15	80	23	17	32	26	1.96
773813--774318	92	5.4	94	78	5	411	26	17	31	24	1.97
773813--774224	186	2.2	186	83	3	517	26	16	32	24	1.96
774150--774224	23	3.2	23	69	10	62	24	16	36	24	1.94
773813--774250	139	3.1	141	83	1	506	26	16	31	24	1.96
773813--774318	233	2.2	233	83	3	617	26	17	31	24	1.97
774243--774300	23	2.5	23	80	2	71	24	24	29	22	1.99
773813--774297	186	2.6	188	80	5	468	26	17	31	24	1.97
780681--780724	15	3.1	14	83	6	54	70	2	9	18	1.24
780681--780721	14	3.0	13	86	10	55	73	2	9	14	1.19
782569--782612	18	2.5	18	88	3	72	38	6	27	27	1.82
782569--782619	18	2.8	19	75	21	56	39	5	27	27	1.79
782649--782743	23	4.1	23	83	1	100	31	20	29	18	1.96
792092--792145	23	2.3	23	100	0	108	16	20	22	40	1.91
792183--792226	18	2.5	18	88	3	72	27	27	9	36	1.87
792516--792714	80	2.5	81	86	8	298	37	9	13	39	1.76
796466--796499	17	2.1	17	88	5	52	52	0	8	38	1.33
797256--797293	19	2.0	19	89	0	58	65	13	7	13	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797862--797954	40	2.3	40	88	0	141	32	23	15	29	1.95
803294--803375	31	2.6	31	80	5	103	1	29	0	69	0.96
816844--816884	14	2.9	14	81	3	55	51	0	0	48	1.00
819933--820105	86	2.0	86	100	0	346	44	12	11	31	1.78
834561--834610	18	2.8	18	78	0	64	20	18	20	42	1.90
834892--834932	2	20.5	2	90	9	66	51	2	0	46	1.14
835519--835586	20	3.3	20	71	15	66	55	0	0	44	0.99
835492--835595	42	2.5	41	84	10	122	51	1	0	45	1.18
835518--835641	42	2.9	43	79	11	141	51	0	1	45	1.16
835599--835662	27	2.3	27	81	7	76	56	1	1	40	1.18

Tables:   1   2   3   4   5   6   7   8   9   10