Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397273.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_239.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3496717

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 994 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3373676--3373712
6
6.2
6
90
0
56
18
37
0
43
1.51
3378510--3378692
36
5.2
36
83
4
225
44
16
6
32
1.72
3378508--3378692
71
2.7
71
83
5
218
45
16
5
32
1.71
3395722--3395920
35
5.7
35
79
8
183
43
13
7
36
1.71
3395729--3395897
71
2.4
70
81
3
187
43
11
5
38
1.66
3396596--3398101
501
3.0
501
91
0
2418
31
18
17
32
1.94
3400991--3401048
25
2.3
25
85
5
73
24
13
31
31
1.94
3412762--3412810
22
2.2
22
85
7
64
42
4
6
46
1.47
3413349--3414319
251
3.9
249
80
4
1055
48
8
11
32
1.68
3415073--3415104
2
16.0
2
100
0
64
50
50
0
0
1.00
3440415--3440457
14
2.8
16
79
13
54
51
0
0
48
1.00
3440462--3440518
22
2.6
22
91
0
87
49
5
1
43
1.35
3440580--3440628
25
2.0
25
91
0
80
55
2
4
38
1.31
3440413--3440789
151
2.5
146
85
5
481
54
2
2
40
1.27
3440639--3440923
123
2.2
126
82
8
362
54
2
3
40
1.28
3440708--3441062
42
8.5
42
64
15
117
54
1
3
40
1.28
3440945--3440979
5
7.2
5
90
6
54
80
0
2
17
0.84
3440456--3441084
292
2.2
274
82
8
739
55
2
3
39
1.28
3441020--3441099
26
3.0
27
76
10
85
53
1
1
43
1.16
3441046--3441090
22
2.0
22
91
0
72
48
2
2
46
1.26
3445902--3445982
39
2.1
39
100
0
162
27
35
4
32
1.78
3447262--3447452
29
6.7
29
80
7
201
37
11
12
38
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3447261--3447452
57
3.4
56
80
5
206
37
11
11
39
1.79
3449679--3449737
17
3.4
16
73
15
55
50
0
6
42
1.28
3449688--3449746
19
3.2
19
68
18
52
54
0
11
33
1.37
3449677--3449746
36
1.9
36
88
5
106
51
0
10
38
1.36
3451104--3451161
30
1.9
30
92
0
98
36
10
10
43
1.73
3451114--3451273
57
2.8
57
80
6
180
38
11
10
39
1.77
3451055--3451273
29
7.7
29
75
5
194
38
12
11
37
1.79
3465651--3474982
171
54.8
170
75
7
5810
34
13
12
39
1.82
3465643--3474982
341
27.4
340
75
7
4185
34
13
12
39
1.82
3483542--3483572
15
2.1
15
100
0
62
29
0
32
38
1.57
3486271--3486365
36
2.7
36
93
1
156
41
23
24
11
1.87
3496213--3496270
25
2.3
25
85
5
73
24
13
31
31
1.94

Tables:   1   2   3   4   5   6   7   8   9

The End!