genome.fa.s28.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397281.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_39.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1667509

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 576 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418064--418680	342	1.8	341	84	5	845	33	14	13	38	1.85
418607--418828	122	1.8	121	85	2	311	36	14	12	36	1.83
429663--429772	57	1.9	57	100	0	220	31	20	17	30	1.96
430115--430155	21	2.0	21	95	0	73	36	17	34	12	1.87
433745--433927	68	2.7	68	84	0	240	34	12	19	34	1.88
438427--438475	20	2.5	20	93	0	80	48	2	10	38	1.48
456849--456887	20	2.0	20	89	0	60	66	7	7	17	1.40
459464--459512	15	3.3	15	79	0	53	32	10	26	30	1.89
468508--468596	29	3.1	29	83	9	128	37	13	7	41	1.74
470378--470415	20	1.9	20	94	0	67	47	2	5	44	1.39
476690--477075	80	4.8	80	80	4	384	33	9	22	34	1.87
481249--481384	67	2.0	67	100	0	272	36	11	22	30	1.89
488666--488881	80	2.7	81	84	5	287	31	8	24	35	1.86
488683--488912	80	2.9	79	83	7	216	30	9	25	34	1.87
498929--498960	16	2.0	16	93	0	55	40	18	21	18	1.91
504011--504225	68	3.2	68	82	1	243	37	11	16	35	1.84
507271--507542	144	1.9	144	79	8	313	37	15	12	34	1.86
508490--508523	15	2.3	15	89	0	50	32	0	38	29	1.58
509580--509625	15	3.0	16	81	15	53	78	0	2	19	0.86
509579--509625	16	3.0	15	87	6	58	78	0	2	19	0.85
509579--509625	8	6.0	8	77	5	51	78	0	2	19	0.85
509618--509683	10	6.4	11	73	16	52	74	1	16	7	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509610--509677	20	3.3	20	76	13	59	75	1	13	10	1.12
510534--510569	15	2.4	16	86	13	51	83	2	0	13	0.76
515709--515968	68	3.8	67	82	4	270	35	10	18	35	1.86
519193--519648	170	2.7	170	77	6	397	39	12	13	33	1.82
520731--520787	20	2.8	20	81	2	69	19	5	12	63	1.47
521799--521875	37	2.1	37	90	0	118	35	2	27	35	1.71
535327--535396	36	2.0	35	88	2	104	30	7	17	45	1.75
535416--535482	35	1.9	35	90	0	107	35	5	14	43	1.71
539176--539451	35	7.9	35	79	4	281	33	7	15	43	1.75
539276--539430	71	2.2	71	87	1	213	34	7	14	43	1.74
539229--539444	106	2.0	105	89	0	324	35	7	14	42	1.74
556182--556216	18	1.9	18	88	0	52	57	2	0	40	1.14
562394--562481	29	3.0	28	83	8	104	47	2	20	29	1.62
563821--563931	49	2.3	49	84	6	136	30	10	25	33	1.90
565159--565790	171	3.7	169	75	8	435	38	13	15	32	1.86
567159--567640	171	2.8	169	81	4	517	38	13	15	32	1.85
567882--568246	171	2.1	169	79	7	389	40	10	12	36	1.78
567990--568321	170	1.9	171	81	6	397	39	9	13	37	1.78
571369--571985	343	1.8	341	79	6	719	38	12	15	33	1.85
571180--572991	171	10.6	169	72	8	694	38	13	15	33	1.86
571643--572629	511	1.9	510	81	5	1197	38	13	14	33	1.85
571659--572796	511	2.2	510	80	5	1183	38	13	14	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573350--573775	171	2.5	169	80	7	457	39	13	13	34	1.83
573872--574373	171	2.9	171	80	5	506	37	12	12	36	1.83
605100--605147	20	2.6	19	87	9	64	41	4	0	54	1.20
622140--622182	11	4.1	11	82	11	54	32	0	0	67	0.91
637581--637640	25	2.4	25	85	0	75	28	28	18	25	1.98
640727--640781	25	2.2	25	83	0	65	27	20	25	27	1.99
645566--645609	21	2.0	22	86	4	63	61	11	0	27	1.30
655729--655768	17	2.4	17	86	0	53	35	10	32	22	1.87
664458--664505	23	2.1	23	84	3	62	37	14	12	35	1.84
666237--666485	114	2.2	114	96	0	453	44	6	11	36	1.68
666237--666518	114	2.5	114	91	2	406	42	6	12	37	1.70
669026--669144	27	4.4	27	82	4	141	26	26	15	30	1.96
671630--671663	14	2.4	14	90	0	50	35	0	0	64	0.94
682134--682215	19	4.3	19	67	20	53	40	13	10	35	1.80
682133--682244	58	1.9	58	85	3	154	40	15	9	34	1.80
690204--693257	170	18.0	170	72	8	1644	37	14	14	33	1.87
693532--693571	20	2.0	21	95	5	73	37	15	17	30	1.90
695270--695331	22	3.0	20	88	11	81	29	16	19	35	1.93
695763--697341	170	9.3	169	73	7	1036	32	15	14	37	1.87
703867--704287	179	2.4	171	82	9	478	36	15	15	33	1.88
717398--717494	48	2.0	48	100	0	194	40	10	24	24	1.86
722023--722131	30	3.7	29	77	11	114	42	9	9	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722039--722122	28	2.9	28	80	5	96	45	9	8	36	1.67
731560--731627	29	2.4	28	80	2	82	42	11	14	30	1.82
731560--731659	28	3.5	28	78	5	94	43	10	13	34	1.77
731822--731854	17	1.9	17	88	11	50	39	3	15	42	1.62
735310--735453	28	5.0	28	82	6	162	40	10	13	34	1.79
735351--735473	59	2.1	58	87	4	176	43	8	9	38	1.69
735317--735474	29	5.4	28	82	7	163	39	9	12	38	1.75
739118--739203	29	3.0	28	81	5	100	37	13	8	40	1.75
746230--746434	35	6.0	35	71	6	134	28	11	24	35	1.91
746282--746392	32	3.4	32	73	7	96	29	11	19	38	1.88
746227--746413	67	2.8	67	85	0	266	27	11	24	37	1.89
750546--750644	28	3.3	30	76	9	96	39	10	10	40	1.73
759985--760111	29	4.4	29	75	12	118	33	12	11	42	1.79
775163--775201	20	2.0	20	100	0	78	30	10	28	30	1.90
775160--775213	20	2.7	20	88	0	72	35	9	25	29	1.87
775550--775724	32	5.1	35	68	14	123	26	13	23	37	1.91
775570--775756	35	5.5	35	72	10	145	29	13	23	33	1.93
775551--775742	67	2.9	67	89	0	285	26	13	23	35	1.92
782790--782836	22	2.0	24	84	8	62	63	0	2	34	1.06
783996--784064	35	2.0	35	85	0	93	33	30	11	24	1.91
809869--809997	68	1.9	68	83	3	170	37	6	18	37	1.78
809991--810118	68	1.9	67	85	6	177	36	10	18	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
811450--814432	171	17.5	169	73	8	1558	34	13	13	38	1.84
813746--814428	343	2.0	343	81	3	793	34	14	13	37	1.85
815833--815939	43	2.5	42	82	7	126	40	23	15	20	1.91
815856--815959	43	2.4	44	87	7	142	37	25	10	25	1.88
819106--819180	36	2.1	36	87	5	107	24	21	24	30	1.99
824749--824786	15	2.4	17	86	8	53	50	0	21	28	1.49
830058--830900	343	2.5	342	77	6	803	36	11	14	36	1.83
830058--830900	171	4.9	171	77	3	721	36	11	14	36	1.83
833720--834733	171	6.0	168	75	7	733	34	15	13	36	1.86
849782--849835	28	1.9	28	96	0	99	46	7	33	12	1.70
850938--851874	171	5.5	171	75	6	703	34	14	13	38	1.85
863893--863978	20	4.2	20	75	8	75	41	12	10	34	1.78
864435--864609	68	2.6	68	80	5	176	36	20	8	34	1.82
871281--871481	80	2.5	80	87	4	273	34	10	21	33	1.88
878776--879003	80	2.8	82	84	7	290	35	21	9	34	1.85
886815--887051	68	3.5	68	83	3	244	35	8	19	36	1.82
893634--893669	13	2.8	13	88	12	56	30	0	19	50	1.48
894956--894988	17	1.9	17	88	11	50	42	15	3	39	1.62
902729--904217	171	8.7	170	78	6	1122	38	14	14	33	1.86
910518--910669	80	1.9	81	85	9	213	34	9	22	32	1.87
913551--914154	171	3.5	170	77	6	537	40	13	13	32	1.83
914612--915002	171	2.3	170	78	3	390	40	13	14	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914665--915431	171	4.5	171	75	6	533	38	12	14	34	1.84
916666--916696	5	6.2	5	100	0	62	38	0	0	61	0.96
930549--930585	2	18.5	2	88	0	56	54	2	0	43	1.14
935715--935771	20	2.8	21	86	2	71	38	19	14	28	1.90
935736--935907	91	1.9	89	80	9	195	38	19	12	29	1.88
941009--942157	341	3.4	340	77	5	1036	37	13	14	34	1.85
941390--942156	171	4.5	167	74	5	414	38	14	13	33	1.85
943017--943068	20	2.5	20	75	3	50	32	19	13	34	1.90
943877--944065	35	5.3	35	72	4	146	43	14	6	30	1.70
945681--945971	80	3.6	80	87	2	404	32	24	9	32	1.88

Tables:   1   2   3   4   5