genome.fa.s28.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397281.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_39.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1667509

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 576 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1512968--1513522	178	3.1	179	79	6	532	38	13	13	33	1.84
1517166--1517225	21	2.9	21	100	0	120	40	21	13	25	1.89
1517166--1517254	42	2.1	42	85	4	117	39	21	14	24	1.91
1518226--1518641	170	2.4	169	81	4	460	41	13	12	32	1.83
1521249--1525656	171	25.9	169	72	7	2235	38	13	13	33	1.84
1521617--1521947	170	2.0	161	81	6	305	39	11	12	32	1.80
1521342--1525656	341	12.7	337	70	9	1413	38	13	13	32	1.84
1530846--1531173	174	1.9	174	81	5	394	37	14	13	34	1.85
1525727--1531371	171	33.1	170	73	7	3351	39	12	13	34	1.83
1531242--1531519	147	1.9	148	83	3	364	35	13	16	33	1.89
1531377--1534246	171	16.8	170	71	9	1114	37	12	14	33	1.85
1535462--1537984	341	7.4	339	73	8	1011	38	11	12	35	1.81
1534376--1538845	171	26.3	171	74	6	2799	38	12	13	34	1.81
1538986--1539028	19	2.3	19	96	4	79	55	0	0	44	0.99
1538992--1539034	19	2.5	16	82	14	50	60	0	0	39	0.97
1541698--1546969	171	31.0	171	75	7	3640	38	12	13	34	1.83
1541731--1561534	342	58.0	339	71	10	5485	38	12	13	34	1.83
1541698--1561576	513	38.8	510	73	8	8301	38	12	13	34	1.83
1547058--1547927	171	5.1	169	74	7	578	38	11	12	34	1.80
1548004--1557728	171	57.0	169	70	10	3302	38	12	13	33	1.83
1548004--1549630	170	9.5	170	76	7	1127	39	12	13	34	1.82
1548058--1561534	341	39.5	336	72	10	3630	38	12	13	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1550475--1561828	680	16.6	681	71	10	2661	38	12	13	33	1.83
1553670--1553780	54	2.1	54	87	3	161	51	8	9	31	1.63
1556682--1557001	163	2.0	162	81	4	376	40	11	13	35	1.81
1553723--1561840	171	47.7	171	73	8	4396	38	12	14	33	1.83
1572047--1576618	171	26.5	169	70	10	1540	38	12	14	34	1.84
1572808--1573116	172	1.8	171	85	2	440	40	11	13	35	1.80
1572047--1573807	343	5.2	341	76	7	945	38	12	14	34	1.83
1573802--1576637	171	16.6	170	77	5	1963	39	12	14	33	1.84
1574237--1576610	345	7.0	341	76	6	1774	39	12	14	33	1.83
1576683--1579181	171	14.7	171	74	7	1725	38	12	14	35	1.84
1576712--1577583	172	5.1	171	75	7	662	37	12	14	35	1.84
1577804--1579130	343	3.9	339	78	6	1243	39	12	13	34	1.83
1576765--1579181	514	4.7	512	74	8	1612	38	12	13	35	1.83
1580567--1580614	14	3.4	14	76	21	55	62	0	37	0	0.95
1580556--1580628	28	2.6	28	91	2	119	67	0	32	0	0.91
1582988--1583864	171	5.1	169	78	6	802	39	13	13	33	1.85
1583996--1584989	512	2.0	501	77	7	999	37	12	14	33	1.84
1583948--1585107	171	6.8	169	73	8	695	37	12	14	32	1.85
1585051--1585157	50	2.1	50	86	3	144	25	16	28	29	1.97
1585203--1590790	171	32.5	169	75	7	3615	38	12	14	34	1.83
1585203--1590790	341	16.3	339	74	7	3696	38	12	14	34	1.83
1589549--1589604	24	2.3	24	93	0	94	30	3	33	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1592709--1592790	42	2.0	42	97	0	155	36	20	4	37	1.74
1601425--1601607	73	2.5	73	83	0	222	25	20	15	38	1.91
1604191--1605654	171	8.6	171	76	6	1121	39	12	13	34	1.83
1604191--1605497	510	2.6	507	79	6	1316	39	12	13	33	1.83
1604213--1605653	339	4.2	342	76	7	995	39	12	13	34	1.83
1606096--1607788	171	9.9	170	75	6	1268	34	13	12	38	1.83
1606204--1607788	340	4.6	339	76	7	1039	34	14	12	38	1.83
1607666--1607931	143	1.9	141	83	3	345	33	16	14	35	1.89
1608265--1615423	171	42.0	170	73	7	4312	33	13	12	38	1.84
1608265--1615423	512	14.0	510	74	8	3822	33	13	12	38	1.84
1615622--1617030	172	8.3	168	73	9	777	38	12	13	35	1.82
1616512--1617030	173	3.0	171	79	7	516	39	11	12	35	1.81
1617201--1620040	171	16.6	171	76	6	2030	39	12	12	34	1.82
1617350--1619293	343	5.7	343	72	11	755	40	12	12	34	1.81
1617201--1619862	515	5.2	505	76	7	1719	40	12	12	34	1.82
1620081--1622199	171	12.4	169	73	4	926	35	13	11	36	1.81
1622728--1630178	171	43.3	170	72	7	3565	35	13	11	36	1.82
1623264--1623596	173	2.0	161	82	4	321	35	14	11	35	1.82
1623806--1623834	9	3.2	9	100	0	58	31	0	0	68	0.89
1627953--1628693	403	1.8	404	80	2	907	36	13	11	36	1.81
1631533--1631919	171	2.2	172	77	8	426	36	13	16	34	1.87
1632519--1633422	171	5.3	167	74	6	658	38	11	12	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1633871--1638344	171	26.2	170	73	6	2328	35	12	14	34	1.83
1638445--1645567	171	41.9	170	70	9	2622	35	14	12	36	1.84
1639807--1639847	22	1.9	21	85	5	55	29	17	7	46	1.74
1645019--1645058	21	1.9	21	84	0	53	52	7	15	25	1.68
1646049--1646499	170	2.6	170	77	5	412	34	13	11	39	1.81
1647439--1647770	170	2.0	160	75	12	289	37	13	10	35	1.79
1647631--1649065	170	8.4	170	72	8	538	36	12	11	36	1.80
1649278--1650837	516	3.0	512	78	4	1491	36	12	11	37	1.81
1649278--1650825	344	4.5	341	73	5	1066	36	12	11	36	1.81
1649099--1650837	171	10.2	170	73	5	1077	35	12	12	37	1.81
1652363--1653377	171	5.9	171	76	5	852	34	13	13	37	1.84
1652445--1653377	342	2.7	340	79	4	975	34	13	13	37	1.83
1653458--1655818	171	13.9	166	71	8	688	34	13	12	36	1.82
1652987--1653833	469	1.8	460	82	4	1026	35	12	11	37	1.80
1653577--1654519	343	2.8	332	75	8	768	34	14	11	34	1.82
1655996--1657074	171	6.3	170	75	3	786	33	13	13	37	1.84
1657239--1657472	114	2.1	114	85	1	308	38	19	12	29	1.88
1657392--1658174	171	4.6	171	77	6	569	35	15	12	37	1.85
1657392--1658174	342	2.3	333	80	4	840	35	15	12	37	1.85
1658377--1659075	170	4.1	170	78	3	627	34	13	13	36	1.85
1658379--1659075	341	2.0	341	79	4	726	34	13	13	36	1.85
1659550--1660513	171	5.7	172	77	5	748	36	12	12	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1659550--1660457	342	2.7	339	78	4	903	35	12	12	39	1.81
1660612--1660661	19	2.6	19	87	6	66	54	0	4	42	1.19
1662027--1664236	171	13.0	170	74	4	1189	33	13	12	36	1.83
1662732--1665119	339	7.1	337	73	7	1188	34	13	11	37	1.82
1662027--1665119	339	9.1	339	73	5	1141	34	13	11	36	1.82
1664558--1665126	172	3.3	170	80	4	633	35	14	10	38	1.81
1665241--1667509	171	13.3	170	72	7	1046	34	13	11	37	1.81
1666893--1667506	341	1.8	331	85	2	786	34	14	13	36	1.84

Tables:   1   2   3   4   5

The End!