genome.fa.s28.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397281.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_39.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1667509

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 576 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947248--947285	20	1.9	20	89	10	60	73	7	5	13	1.22
951660--951724	19	3.8	18	80	15	66	36	4	0	58	1.19
951677--951724	19	2.6	19	90	3	71	35	6	0	58	1.23
955716--955773	28	2.1	28	90	0	89	15	32	5	46	1.68
958919--959061	29	5.0	28	71	9	90	36	12	10	40	1.78
960187--961363	170	6.9	168	72	9	638	37	14	14	32	1.87
960948--961363	171	2.4	170	79	5	421	38	12	15	32	1.86
962121--962965	341	2.5	343	77	3	844	39	13	15	32	1.85
961415--964236	171	16.6	171	73	6	1611	37	13	15	33	1.86
962852--963162	165	1.9	165	81	4	385	37	13	14	34	1.86
963513--964236	169	4.2	170	73	10	444	37	12	15	34	1.85
963819--964235	170	2.5	172	78	7	415	38	12	16	33	1.85
968759--968856	49	2.0	49	93	0	169	35	11	3	50	1.54
969171--969329	76	2.1	77	89	1	239	38	14	8	38	1.76
975146--975719	169	3.4	168	78	6	466	38	13	13	33	1.85
975235--975939	169	4.2	168	75	8	431	39	13	14	33	1.85
980589--980969	168	2.3	170	79	6	409	37	12	14	35	1.83
981068--983648	170	15.3	168	70	10	1030	37	13	14	34	1.85
981068--982814	679	2.6	675	86	3	2250	37	13	14	34	1.85
981688--982862	509	2.3	507	77	5	1151	38	13	13	34	1.84
983962--984398	171	2.6	169	80	5	450	39	13	15	32	1.86
996837--996863	11	2.5	11	100	0	54	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000729--1000783	25	2.2	25	90	3	85	32	16	9	41	1.80
1006818--1006856	11	3.6	11	89	3	62	2	25	0	71	0.98
1008230--1010554	171	13.7	171	74	7	1339	38	13	14	34	1.85
1020909--1020941	15	2.1	16	94	5	59	24	12	12	51	1.73
1022845--1023057	73	2.9	73	76	4	214	38	13	21	27	1.90
1026402--1026439	20	1.9	20	89	10	60	36	18	21	23	1.95
1030246--1030284	20	2.0	20	85	10	53	33	20	10	35	1.86
1034527--1034740	74	2.9	73	84	1	266	25	24	15	35	1.94
1036260--1036288	15	1.9	15	100	0	58	58	13	6	20	1.58
1044551--1044687	73	1.9	73	90	0	220	24	25	15	35	1.94
1046315--1047812	170	8.8	169	74	9	746	38	14	12	34	1.84
1046315--1047716	511	2.7	506	75	8	1130	38	13	12	34	1.84
1048405--1048891	171	2.8	169	76	6	464	39	13	13	33	1.85
1049781--1051836	171	12.1	171	76	6	1297	38	13	14	33	1.85
1051833--1053127	171	7.6	172	74	9	931	38	13	13	34	1.85
1052979--1053278	150	2.0	151	81	4	347	37	14	14	34	1.86
1053129--1054295	170	6.9	168	72	10	598	38	11	13	33	1.80
1054691--1054730	18	2.2	19	90	4	64	47	0	2	50	1.14
1058348--1065618	171	42.9	171	70	9	2867	34	13	13	38	1.84
1059971--1065538	341	16.4	341	71	10	2282	34	13	13	38	1.84
1061705--1062607	481	1.9	481	86	2	1289	35	12	12	39	1.81
1063056--1063425	184	2.0	185	86	2	521	33	12	12	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065799--1066428	171	3.7	168	75	8	567	34	13	12	36	1.83
1068406--1068845	170	2.6	169	80	6	464	34	14	15	35	1.88
1068302--1068873	171	3.3	169	78	6	494	33	14	13	38	1.85
1069524--1070587	171	6.2	170	72	7	413	34	14	12	35	1.84
1071413--1071815	170	2.4	169	79	10	412	34	16	13	35	1.88
1072384--1073013	341	1.8	341	81	5	781	39	12	14	34	1.83
1073047--1073660	170	3.6	169	76	6	537	36	12	14	35	1.85
1073837--1074484	322	2.0	321	79	5	682	35	14	14	35	1.86
1074159--1075413	171	7.4	168	77	8	873	34	13	13	38	1.84
1074159--1075301	342	3.3	340	80	4	1056	34	14	13	38	1.85
1075463--1079511	171	23.8	170	74	8	2361	34	13	13	37	1.85
1075463--1079511	511	7.9	507	73	9	2443	34	13	13	37	1.85
1080575--1080736	73	2.2	73	83	0	198	37	14	24	24	1.93
1082338--1082383	21	2.2	20	81	7	56	71	2	23	2	1.08
1083840--1085649	171	10.6	170	75	7	1255	37	12	15	34	1.86
1083841--1085430	341	4.7	339	75	8	1217	37	12	15	34	1.85
1083841--1085419	682	2.3	679	80	6	1742	37	12	15	34	1.85
1085915--1086342	172	2.5	170	76	5	439	37	13	14	34	1.86
1086591--1086629	18	2.2	18	95	0	69	46	2	0	51	1.14
1087836--1088738	172	5.3	170	73	10	442	35	12	11	39	1.81
1088961--1090773	171	10.6	169	77	8	1457	33	15	13	37	1.87
1088991--1090773	341	5.2	337	76	8	1520	33	15	13	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089226--1091336	682	3.1	676	76	11	1686	33	14	13	38	1.86
1090775--1095914	171	30.1	167	68	10	1395	32	13	13	37	1.84
1091313--1091366	22	2.5	22	96	0	99	24	3	9	62	1.41
1096804--1097220	170	2.4	173	79	4	414	32	16	13	35	1.87
1097147--1097305	86	1.8	86	85	5	223	33	21	15	28	1.94
1097241--1102557	171	31.2	169	71	8	2767	34	14	12	36	1.84
1097319--1102557	341	15.4	338	71	8	2553	34	14	12	37	1.84
1102431--1102678	121	2.0	121	85	4	331	37	9	13	39	1.78
1102552--1106696	171	24.4	169	73	7	2271	33	13	13	38	1.84
1102552--1106675	341	12.1	341	73	7	2206	33	14	12	38	1.84
1105528--1105816	160	1.8	160	83	1	391	35	17	11	36	1.85
1106703--1107728	170	6.0	168	76	9	728	34	13	12	37	1.84
1106130--1107259	571	2.0	571	82	5	1399	34	13	12	39	1.82
1106746--1107728	171	5.8	170	76	9	813	34	14	13	37	1.84
1112434--1112605	36	4.9	35	85	6	197	34	6	13	44	1.71
1114085--1114111	14	1.9	14	100	0	54	62	7	0	29	1.22
1121612--1121642	15	2.1	15	93	0	53	38	3	16	41	1.64
1124096--1124163	33	2.1	33	88	0	100	33	27	4	33	1.77
1124818--1124863	19	2.3	20	85	7	67	67	13	6	13	1.41
1125598--1125645	19	2.6	18	83	9	53	54	2	4	39	1.32
1128852--1128892	22	1.9	22	90	5	66	7	12	2	78	1.06
1128852--1128898	22	2.2	21	84	3	58	8	17	2	72	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1150220--1150354	28	4.7	28	77	8	128	37	10	14	37	1.81
1150217--1150352	29	4.8	28	78	8	112	37	10	14	37	1.81
1160792--1160829	19	2.1	19	95	5	69	23	10	13	52	1.71
1160812--1160884	30	2.5	28	82	10	85	41	6	10	41	1.67
1160812--1160897	29	2.9	29	80	10	95	44	6	11	37	1.68
1162073--1162200	68	1.9	68	81	3	159	37	8	17	35	1.81
1162802--1162871	20	3.5	19	70	16	52	40	14	11	34	1.82
1163159--1163188	15	2.0	15	100	0	60	40	20	13	26	1.89
1173110--1173228	21	5.3	21	65	20	62	40	2	5	51	1.40
1180711--1180773	31	2.0	31	96	0	117	39	11	22	26	1.87
1182562--1182619	25	2.2	25	78	6	62	20	17	32	29	1.95
1195381--1195434	23	2.3	23	87	6	74	0	29	1	68	1.00
1195392--1195453	15	4.0	16	83	10	67	3	33	1	61	1.22
1195393--1195441	23	2.2	22	85	3	62	2	32	0	65	1.04
1199748--1199772	12	2.1	12	100	0	50	0	16	8	76	1.02
1204106--1204157	25	2.1	25	100	0	104	38	15	19	26	1.91
1205565--1205601	12	3.1	12	88	11	58	43	16	40	0	1.48
1209275--1209394	47	2.6	47	95	0	213	48	11	4	35	1.59
1209820--1209896	40	1.9	40	89	0	118	28	22	20	28	1.98
1210536--1210809	139	2.0	140	80	2	318	26	14	21	37	1.92
1217526--1217622	40	2.4	40	86	3	142	36	27	4	31	1.76
1227527--1227577	11	4.5	11	80	5	57	29	0	1	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1227852--1227894	22	2.0	22	86	4	61	67	4	4	23	1.28
1236565--1236647	43	1.9	43	87	0	121	40	20	21	16	1.91
1238217--1238323	51	2.1	50	85	1	142	28	8	20	42	1.81
1241983--1242037	14	3.9	14	87	2	74	72	0	25	1	0.94
1241984--1242035	21	2.5	21	84	6	61	73	0	25	1	0.94
1243087--1243116	2	15.5	2	93	6	53	50	0	0	50	1.00
1245264--1245450	71	2.6	70	80	4	196	28	14	19	36	1.92
1247531--1247628	48	2.0	48	96	0	178	26	13	4	56	1.55
1250685--1250927	60	4.1	59	76	8	226	40	16	10	32	1.82
1250685--1251014	58	5.5	59	72	9	204	37	16	11	34	1.84

Tables:   1   2   3   4   5