genome.fa.s32.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397285.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_299.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1083202

Tables:   1   2   3   4   

This is table  3  of  4  ( 385 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567102--567293	70	2.7	71	80	7	216	37	4	12	45	1.63
578297--578340	21	2.0	22	86	4	63	29	0	9	61	1.27
578990--579025	12	2.9	13	88	12	58	41	16	41	0	1.48
582086--582149	33	1.9	33	81	6	76	28	20	25	26	1.99
592778--592938	76	2.1	77	86	3	227	42	13	4	39	1.65
611933--611975	22	2.0	22	81	9	52	65	13	2	18	1.38
622415--622451	15	2.5	15	90	0	56	21	21	2	54	1.58
622711--622952	77	3.1	76	85	1	304	39	11	7	41	1.70
635406--635568	76	2.1	77	91	1	265	41	7	11	39	1.70
642163--642197	16	2.3	15	90	5	52	8	2	20	68	1.29
642345--642383	21	1.9	20	89	5	60	35	12	12	38	1.82
643415--643578	69	2.4	69	79	6	156	25	15	26	32	1.96
646095--646133	19	2.0	21	85	10	55	17	35	0	46	1.49
647033--647066	17	2.0	17	88	0	50	32	14	17	35	1.91
648504--648574	36	2.0	36	88	5	108	42	12	18	26	1.86
650151--650238	21	4.1	21	76	5	77	22	5	18	53	1.65
650895--651018	64	1.9	65	83	4	162	33	13	20	32	1.92
651000--651072	28	2.6	28	80	0	92	38	12	19	30	1.88
653306--653391	21	4.1	21	80	8	79	26	5	18	48	1.70
653729--653768	21	1.9	21	84	0	53	27	7	5	60	1.45
662768--662792	12	2.1	12	100	0	50	40	0	0	60	0.97
664135--664182	19	2.6	19	86	3	62	41	4	0	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669129--669188	20	3.0	20	80	4	77	45	15	6	33	1.72
669108--669188	40	2.0	41	90	7	130	44	16	7	32	1.75
669693--669761	29	2.4	28	85	4	102	34	15	21	27	1.94
683206--683262	20	2.8	20	94	0	96	36	15	14	33	1.88
685158--685201	21	2.1	21	86	0	61	22	4	20	52	1.65
685168--685259	21	4.3	22	77	10	84	28	1	18	52	1.53
685168--685255	43	2.0	43	86	4	124	27	1	17	54	1.50
685125--685376	139	1.8	138	84	5	348	30	6	17	45	1.73
685283--685376	21	4.5	21	81	10	93	30	5	15	47	1.68
685516--685564	21	2.4	21	86	3	73	42	14	10	32	1.79
691253--691350	50	2.0	49	86	6	135	29	30	17	22	1.96
695003--695078	28	2.7	28	83	0	98	31	13	21	34	1.91
703657--703942	155	1.8	157	93	1	495	46	10	10	32	1.72
708571--708607	15	2.4	16	91	8	60	64	0	0	35	0.94
710301--710348	19	2.6	18	83	3	51	41	4	0	54	1.20
718147--718202	2	28.0	2	96	0	103	0	51	0	48	1.00
720303--720372	37	2.0	37	86	8	101	37	7	2	52	1.44
720621--720679	26	2.3	26	82	5	75	45	5	1	47	1.34
720323--721445	357	3.2	340	79	7	1024	40	6	6	45	1.57
722884--723040	31	5.3	30	84	8	189	42	7	7	42	1.60
727948--727991	21	2.0	22	86	4	63	63	6	0	29	1.20
728810--728858	23	2.1	23	85	7	64	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729350--729379	14	2.1	15	93	6	53	36	0	6	56	1.26
729995--730023	2	14.5	2	100	0	58	48	0	0	51	1.00
730581--730611	14	2.2	14	94	0	53	45	6	16	32	1.72
734151--734202	4	12.2	4	77	18	52	23	1	5	69	1.20
750427--750479	19	2.7	20	85	11	74	32	9	13	45	1.75
753885--753916	10	3.1	10	95	4	55	78	0	21	0	0.76
754746--755060	89	3.5	89	78	7	257	30	16	15	37	1.90
754702--755078	44	8.5	44	78	10	270	29	16	15	37	1.90
754702--755078	45	8.5	44	78	10	270	29	16	15	37	1.90
754690--755078	134	2.9	131	79	7	435	30	16	15	37	1.90
758192--758227	3	12.0	3	87	0	54	30	30	2	36	1.72
758887--758927	21	2.0	21	90	4	66	19	0	4	75	0.98
760341--760402	21	3.0	21	82	0	70	25	17	17	38	1.92
765132--765296	29	5.7	28	82	7	186	39	10	11	38	1.76
765132--765295	59	2.8	58	85	4	206	39	10	11	38	1.76
765443--765475	17	1.9	17	88	11	50	39	3	15	42	1.62
767194--767219	13	2.0	13	100	0	52	76	7	7	7	1.15
767611--767714	54	1.9	53	88	1	154	58	9	5	25	1.52
769229--769276	16	3.0	15	77	22	53	66	0	29	4	1.10
785124--785162	20	2.0	20	89	0	60	28	15	25	30	1.96
800168--800330	64	2.5	64	80	6	170	29	13	23	33	1.93
800187--800368	65	2.8	65	78	8	169	30	13	21	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
801288--801331	21	2.0	22	86	4	63	29	0	9	61	1.27
801981--802027	12	3.9	12	91	8	78	40	17	42	0	1.49
815609--815702	36	2.6	36	98	0	179	27	10	26	35	1.90
822018--822087	36	1.9	36	88	5	106	27	11	27	34	1.91
840353--840402	19	2.5	20	77	3	57	48	8	12	32	1.69
842756--842809	20	2.7	20	82	0	63	33	16	14	35	1.90
860720--860746	2	13.5	2	100	0	54	48	0	0	51	1.00
860806--860854	25	2.0	25	88	8	73	42	14	6	36	1.70
867728--867784	12	4.6	12	82	6	69	68	7	5	19	1.33
867728--867795	13	5.4	12	76	11	57	70	5	4	19	1.25
869585--869616	9	3.6	9	95	0	55	31	9	25	34	1.87
871828--871854	12	2.2	12	100	0	54	29	29	0	40	1.57
880476--880520	20	2.2	20	88	0	63	44	17	13	24	1.85
881212--881243	14	2.3	14	94	0	55	46	0	6	46	1.27
881490--881514	12	2.1	12	100	0	50	44	8	8	40	1.63
882463--882533	30	2.4	30	95	0	124	33	11	30	23	1.90
882564--882662	35	2.8	35	79	11	121	24	18	24	33	1.97
885724--885749	6	4.3	6	100	0	52	65	0	0	34	0.93
890017--890068	21	2.3	24	83	9	74	36	1	7	53	1.41
890226--890276	25	2.0	25	92	0	84	45	7	11	35	1.70
893535--893574	19	2.2	18	90	4	62	47	0	0	52	1.00
893557--893586	11	2.7	11	89	0	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
894949--894998	25	2.0	25	92	0	82	22	18	34	26	1.96
894951--895004	25	2.2	25	86	0	72	27	18	31	22	1.97
897475--897515	18	2.1	20	86	13	59	26	14	24	34	1.94
898692--898745	27	2.0	27	85	0	72	25	7	0	66	1.17
898925--898963	8	4.6	8	81	12	51	56	2	0	41	1.13
904313--904340	2	14.0	2	100	0	56	50	0	0	50	1.00
905271--905391	40	3.0	40	87	0	170	36	19	9	34	1.84
909716--909746	5	6.2	5	96	0	53	19	3	38	38	1.68
910073--910101	4	7.2	4	100	0	58	0	24	0	75	0.80
910244--910278	7	5.0	7	100	0	70	28	42	28	0	1.56
914335--914508	92	1.9	92	84	4	235	36	12	15	35	1.86
916474--916582	50	2.2	50	82	11	127	64	1	6	27	1.28
916555--916604	7	7.4	7	75	8	50	72	0	0	28	0.86
916547--916600	27	2.0	26	85	3	72	74	0	0	25	0.83
916552--916634	33	2.5	33	88	2	112	69	0	3	26	1.04
918992--919027	19	1.9	18	88	5	54	50	5	2	41	1.40
921074--921115	21	2.0	21	86	4	59	50	7	2	40	1.43
922141--922208	32	2.1	32	97	0	127	63	19	2	14	1.43
934148--934272	54	2.3	54	86	6	164	37	16	15	31	1.89
934180--934269	26	3.4	26	68	17	76	35	16	14	33	1.89
942027--942275	40	6.3	40	76	11	199	27	9	32	30	1.89
942019--942255	79	3.0	79	88	1	332	27	9	32	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943339--943397	21	2.8	21	97	0	109	37	23	5	33	1.77
952083--952120	20	1.9	19	89	5	58	28	18	15	36	1.92
954215--954250	2	18.0	2	88	0	54	47	2	2	47	1.31
963484--963529	20	2.3	20	85	11	67	28	15	15	41	1.87
965678--965724	18	2.8	17	84	9	53	65	6	2	25	1.27
974318--974405	29	3.1	28	80	4	104	40	10	12	36	1.77
979186--979381	74	2.6	75	84	3	227	42	17	17	21	1.89
985562--985618	29	2.0	29	86	6	80	64	0	35	0	0.93
988556--988608	12	4.2	12	77	13	61	30	9	28	32	1.88
999306--999394	21	4.2	21	89	1	124	40	16	15	26	1.89

Tables:   1   2   3   4