genome.fa.s32.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397285.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_299.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1083202

Tables:   1   2   3   4   

This is table  2  of  4  ( 385 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221683--223610	510	3.8	504	75	6	1419	39	13	12	34	1.82
223836--226993	171	18.7	169	72	9	1514	38	14	12	34	1.84
223836--226656	339	8.3	338	74	8	1398	39	14	12	34	1.83
224854--226250	512	2.7	504	80	6	1456	39	14	11	34	1.82
226711--227016	170	1.8	170	82	5	404	35	13	15	35	1.86
227001--227187	100	1.9	100	97	0	356	40	11	15	32	1.83
227136--227754	169	3.6	169	75	8	565	35	14	14	35	1.87
227769--228647	170	5.1	169	75	9	602	38	13	13	34	1.84
227754--228650	339	2.6	336	80	6	914	39	14	13	33	1.84
229036--229679	169	3.8	169	75	10	533	40	13	12	33	1.81
233220--233298	40	2.0	40	84	0	104	37	22	20	18	1.94
234646--235636	171	5.9	168	71	8	572	38	12	13	35	1.83
236806--237009	107	1.9	107	82	4	259	32	15	16	35	1.90
236911--238269	170	8.0	171	76	5	909	39	14	11	34	1.82
238272--238309	20	1.9	20	94	0	67	21	10	21	47	1.80
238389--238685	160	1.9	160	84	1	407	38	12	13	35	1.82
238329--242293	171	23.4	169	73	10	1907	39	12	13	34	1.83
238288--243695	510	10.7	508	72	11	2699	38	13	13	34	1.83
238337--242290	339	11.7	336	74	9	2158	39	12	13	34	1.83
242991--244545	776	2.0	777	96	0	2851	40	13	12	33	1.82
243909--244485	170	3.4	170	75	6	479	40	13	12	33	1.83
246538--246597	17	3.6	17	80	13	72	68	1	30	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246552--246593	15	2.8	15	92	0	66	71	0	28	0	0.86
248297--248384	44	2.0	44	100	0	176	31	11	15	40	1.83
263794--267661	232	16.9	228	73	12	803	38	12	10	37	1.79
263566--272487	451	19.7	450	75	8	6295	38	13	11	37	1.80
264249--272487	221	36.3	220	74	10	5323	38	13	11	37	1.80
263566--272375	672	12.9	667	76	9	4936	38	13	11	37	1.80
272640--273893	448	2.7	448	77	9	1096	37	12	10	38	1.78
272640--273889	232	5.5	231	76	7	1156	37	12	10	38	1.78
274075--275909	231	8.0	231	74	9	1180	38	12	10	38	1.78
274078--275904	462	4.0	456	76	8	1432	38	12	10	38	1.78
274075--275616	694	2.2	691	80	5	1638	38	12	10	38	1.77
275412--275444	16	1.9	18	88	11	52	27	6	0	66	1.15
274077--275609	462	3.3	460	77	7	1486	38	12	10	39	1.77
275885--275953	11	5.5	11	75	24	66	55	2	2	39	1.30
275900--275965	13	5.1	13	67	26	50	51	4	4	39	1.43
275892--275961	14	5.3	14	75	25	80	54	4	2	38	1.35
275869--275965	26	3.7	26	95	2	169	52	4	5	38	1.43
275676--276192	280	1.8	280	81	5	641	39	11	11	38	1.77
275929--277071	231	5.0	228	76	6	1069	38	13	10	37	1.79
277060--277111	27	1.9	27	92	0	86	44	3	5	46	1.45
276836--277343	259	2.0	258	81	3	601	39	12	10	37	1.78
277173--277574	207	1.9	207	82	4	506	39	16	11	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277517--278112	231	2.6	230	80	5	594	38	11	10	39	1.76
277739--278169	232	1.9	231	83	2	560	38	10	9	41	1.73
283270--283327	29	2.0	29	100	0	116	24	13	27	34	1.93
287293--287343	19	2.7	18	88	8	75	50	3	0	45	1.20
289615--289673	25	2.4	25	88	0	91	27	13	30	28	1.94
296237--296288	22	2.4	22	90	0	77	34	5	15	44	1.70
296259--296338	36	2.2	36	88	0	115	36	6	11	46	1.65
300426--300450	11	2.3	11	100	0	50	72	0	0	28	0.86
300539--300590	19	3.1	16	77	17	61	59	0	0	40	0.97
305515--305572	26	2.2	26	87	0	80	36	10	15	37	1.82
305626--305693	26	2.5	27	83	4	75	38	14	10	36	1.81
315461--315502	14	3.0	15	83	13	54	52	0	0	47	1.00
316644--316697	15	3.5	15	82	2	63	62	3	31	1	1.23
326793--326858	4	15.8	4	78	9	69	46	3	1	48	1.26
326814--326890	17	4.5	17	78	12	86	51	5	0	42	1.24
338864--338920	10	5.7	10	78	0	51	45	12	5	36	1.64
342026--342082	29	2.0	28	93	3	96	28	3	7	61	1.39
344380--344449	22	3.2	22	70	11	63	38	10	21	30	1.86
344379--344462	43	2.0	43	90	0	132	38	9	19	33	1.84
344601--344672	35	2.2	33	83	11	87	56	4	20	18	1.57
348736--348797	31	2.0	31	100	0	124	32	25	3	38	1.72
367819--368865	350	3.0	350	98	0	2001	33	13	17	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369872--369923	21	2.6	19	85	11	61	71	5	23	0	1.07
385707--385749	21	2.0	21	86	8	61	32	0	6	60	1.23
393473--393609	63	2.2	63	98	1	265	43	10	16	29	1.81
406575--406634	29	2.1	29	96	0	111	26	25	21	26	2.00
413439--413473	13	2.7	13	100	0	70	14	20	5	60	1.54
417941--417993	26	2.0	26	100	0	106	41	26	13	18	1.87
420378--420416	19	2.0	20	90	5	62	48	7	0	43	1.31
421640--421814	60	2.9	60	81	1	181	26	30	16	26	1.96
424934--424981	21	2.3	22	82	10	64	56	6	2	35	1.36
444221--444252	15	2.1	15	94	0	55	25	34	0	40	1.56
447625--447671	20	2.3	21	89	7	71	36	6	19	38	1.77
448688--448819	65	2.0	65	95	0	237	29	19	12	37	1.89
452879--452918	21	1.9	21	94	0	71	37	7	17	37	1.78
461230--461264	16	2.4	14	90	9	52	62	2	0	34	1.10
470737--470830	40	2.3	40	90	0	143	40	12	24	22	1.89
482218--482346	66	2.0	66	90	0	204	24	13	24	36	1.92
484585--484789	110	1.9	110	90	0	329	24	8	15	51	1.71
486375--486564	73	2.6	73	75	9	183	41	15	17	25	1.89
494088--494281	73	2.6	74	83	5	250	42	15	18	24	1.88
497748--497786	19	2.0	20	90	5	62	33	28	0	38	1.57
498859--498927	23	3.0	23	84	0	84	21	10	30	37	1.87
499323--499361	19	2.1	19	85	0	51	56	0	5	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500023--500081	30	2.0	30	100	0	118	44	8	10	37	1.69
501172--501206	2	17.5	2	93	0	61	45	0	2	51	1.16
502173--502270	25	3.9	25	95	0	169	23	13	33	29	1.93
502161--502265	50	2.1	50	87	0	147	26	14	29	29	1.95
504726--504782	24	2.4	24	90	0	87	31	17	31	19	1.95
506792--506899	23	4.7	23	68	4	65	31	9	25	34	1.87
506884--506979	46	2.1	46	86	0	129	38	9	23	28	1.86
506896--506956	23	2.6	24	71	7	63	40	8	21	29	1.82
506899--506997	46	2.2	46	81	0	108	39	8	20	32	1.82
506983--507071	23	3.9	23	74	11	74	37	7	20	34	1.82
507068--507118	23	2.2	23	79	6	59	29	13	19	37	1.90
513084--513146	22	2.9	22	76	4	56	47	20	11	20	1.80
513273--513326	22	2.5	22	81	6	65	48	24	9	18	1.77
513510--513574	22	3.0	22	88	4	87	40	24	6	29	1.79
514334--514388	22	2.5	22	84	0	74	34	29	16	20	1.94
517457--517488	2	16.0	2	100	0	64	0	50	0	50	1.00
523503--523540	2	19.0	2	88	0	58	0	50	2	47	1.15
536086--536256	80	2.1	81	86	3	238	22	22	13	42	1.88
538842--538886	23	2.0	23	90	0	72	15	11	37	35	1.83
538949--539000	23	2.3	23	93	0	86	17	11	34	36	1.86
538815--539024	109	1.9	110	87	0	305	22	8	31	37	1.84
541577--541642	26	2.5	26	85	2	78	30	15	3	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542066--542142	23	3.3	23	75	0	82	35	10	24	29	1.89
543953--543985	17	1.9	17	93	0	57	33	45	0	21	1.52
547903--547944	22	1.9	22	90	0	66	54	28	7	9	1.59
548790--548840	22	2.3	22	86	0	66	39	23	15	21	1.92
550176--550246	36	2.0	36	83	5	90	45	11	11	32	1.75
550248--552923	252	10.7	252	82	4	2791	48	7	10	33	1.65
550248--552923	502	5.4	503	81	5	2752	48	7	10	33	1.65
554774--554804	15	2.1	15	100	0	62	32	19	0	48	1.49
556635--557292	253	2.6	252	81	7	773	47	6	12	33	1.68
567099--567281	35	5.2	36	77	8	182	35	4	13	45	1.65

Tables:   1   2   3   4