Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397285.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_299.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1083202

Tables:   1   2   3   4   

This is table  4  of  4  ( 385 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1000758--1000801
5
9.2
5
80
9
56
20
0
0
79
0.73
1000758--1000801
14
3.1
15
80
9
56
20
0
0
79
0.73
1000764--1000801
14
2.7
14
88
11
60
21
0
0
78
0.74
1000758--1000804
23
2.0
24
91
4
78
21
0
0
78
0.75
1004197--1004230
15
2.2
15
89
5
50
32
0
2
64
1.08
1009284--1009308
2
12.5
2
100
0
50
48
0
0
52
1.00
1010287--1010345
25
2.4
25
85
0
73
23
13
32
30
1.93
1014979--1015017
21
1.9
20
89
5
60
33
23
12
30
1.92
1022771--1022814
21
2.0
22
86
4
63
29
0
9
61
1.27
1039048--1039076
11
2.5
12
94
5
51
86
0
13
0
0.58
1039048--1039076
6
5.0
6
91
8
51
86
0
13
0
0.58
1045612--1045655
21
2.0
22
91
4
72
31
0
6
61
1.22
1050322--1050364
18
2.4
18
80
0
50
13
34
4
46
1.65
1062018--1062060
2
21.5
2
90
0
68
55
0
44
0
0.99
1062010--1062060
14
3.6
14
91
0
84
58
0
41
0
0.98
1063282--1063349
29
2.3
29
82
7
84
36
10
26
26
1.88
1064246--1064284
21
2.0
21
90
10
64
25
12
5
56
1.57
1066059--1066109
21
2.4
21
100
0
102
33
9
23
33
1.88
1067648--1067802
71
2.2
71
85
6
199
25
18
15
40
1.90
1067648--1067827
71
2.5
70
80
7
170
24
18
15
41
1.89
1070054--1070083
4
7.5
4
92
0
51
70
0
30
0
0.88
1073503--1073543
18
2.3
18
80
12
50
75
9
0
14
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1074428--1074624
46
4.5
46
84
11
274
27
9
33
29
1.88
1074430--1074631
86
2.3
86
93
0
350
28
8
33
29
1.86
1077483--1077525
3
14.3
3
100
0
86
32
0
0
67
0.91

Tables:   1   2   3   4

The End!