Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001174.1 Hibiscus syriacus cultivar Beakdansim tig00002338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2182627

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1247 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2113306--2113355
24
2.1
24
85
7
66
46
6
0
48
1.27
2115194--2115228
2
17.5
2
100
0
70
51
0
0
48
1.00
2116054--2116094
2
20.5
2
100
0
82
51
0
0
48
1.00
2118309--2118478
74
2.3
74
83
11
215
54
6
9
30
1.58
2118429--2118498
29
2.4
29
81
13
90
57
10
5
27
1.54
2118410--2118608
108
1.8
110
81
9
255
50
8
10
31
1.66
2118684--2118753
32
2.2
32
84
5
88
55
5
7
31
1.50
2127005--2127058
19
2.8
19
88
2
63
35
25
25
12
1.92
2127014--2127058
19
2.4
19
92
0
72
33
24
28
13
1.93
2136582--2136615
16
2.1
17
88
5
52
35
0
0
64
0.94
2136908--2136950
22
2.0
22
95
0
77
51
0
0
48
1.00
2136913--2136964
17
3.1
17
75
10
54
51
0
0
48
1.00
2137476--2137590
3
38.3
3
92
0
95
33
10
0
54
1.40
2138319--2138354
18
2.0
18
88
0
54
25
36
8
30
1.85
2139189--2139221
2
16.5
2
100
0
66
48
0
0
51
1.00
2139306--2139357
22
2.4
22
100
0
104
28
13
0
57
1.36
2139549--2139607
5
11.4
5
75
7
55
22
3
1
72
1.08
2139546--2139607
16
3.9
16
76
2
63
22
3
1
72
1.08
2139542--2139594
27
2.0
27
85
7
72
24
3
1
69
1.15
2142102--2142157
15
3.9
15
81
11
73
35
21
12
30
1.90
2143702--2143754
15
3.5
15
76
16
56
33
5
20
39
1.76
2143853--2143930
23
3.4
23
68
10
61
17
20
26
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2151339--2151368
12
2.5
12
94
0
51
33
0
6
60
1.23
2155072--2155154
18
4.8
18
78
13
68
73
1
9
15
1.15
2155082--2155154
9
8.4
9
76
19
66
76
1
8
13
1.07
2155100--2155149
5
10.6
5
75
12
52
78
2
4
16
1.00
2155080--2155154
23
3.3
22
79
7
69
76
1
8
14
1.08
2155312--2155349
15
2.5
15
83
8
51
73
2
7
15
1.17
2155390--2155414
2
12.5
2
100
0
50
52
48
0
0
1.00
2155535--2155583
15
3.3
15
83
8
57
73
2
12
12
1.18
2155186--2155653
234
2.0
229
94
4
823
62
10
10
15
1.53
2155626--2155650
2
12.5
2
100
0
50
52
48
0
0
1.00
2157052--2157084
13
2.5
13
95
0
57
21
3
0
75
0.93
2160934--2161470
183
2.9
183
94
0
941
27
20
21
30
1.98
2162690--2163009
105
3.1
104
90
5
481
30
20
11
36
1.89
2162909--2162984
36
2.1
36
90
0
116
22
21
15
40
1.90
2163184--2163814
105
6.0
105
90
2
914
33
26
17
21
1.96
2164356--2164460
37
2.8
37
85
0
138
41
14
14
29
1.85
2164816--2164858
17
2.6
16
79
13
52
27
4
2
65
1.25
2164912--2164969
2
29.5
2
92
3
100
46
1
0
51
1.11
2165477--2165525
25
1.9
26
83
4
64
10
16
6
67
1.39
2172081--2172176
43
2.3
42
82
7
113
44
1
23
30
1.60
2172464--2172807
12
27.6
12
70
20
103
40
6
4
47
1.51
2172492--2172592
20
5.3
20
71
15
79
39
12
0
46
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2172513--2172569
26
2.2
26
87
6
80
38
12
1
47
1.51
2172631--2172903
2
139.5
2
75
16
227
44
4
4
47
1.42
2173649--2173700
26
2.0
26
85
3
70
26
17
23
32
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!