genome.fa.s1174.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001174.1 Hibiscus syriacus cultivar Beakdansim tig00002338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2182627

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1247 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262872--262915	20	2.2	20	91	0	70	15	13	22	47	1.81
263444--263513	21	3.3	21	70	5	61	24	35	20	20	1.96
263391--263483	42	2.2	42	80	0	114	20	38	17	23	1.93
263402--263513	42	2.7	42	81	2	109	24	35	18	21	1.95
264898--264934	14	2.6	14	100	0	74	29	0	21	48	1.50
265070--265107	20	1.9	20	94	0	67	47	23	21	7	1.77
265101--265246	20	7.7	20	77	9	153	26	17	23	33	1.96
265417--265451	18	1.9	18	94	0	61	17	2	25	54	1.57
268574--268740	20	8.2	20	69	9	122	20	16	26	36	1.94
268609--268724	21	5.6	21	65	11	78	19	15	23	41	1.90
268589--268747	41	3.9	41	89	0	246	20	15	25	38	1.92
268820--268865	19	2.4	19	85	3	56	21	17	30	30	1.96
268831--268867	19	1.9	19	94	0	65	21	16	29	32	1.95
276197--276645	229	2.0	227	95	0	799	45	8	7	39	1.62
276711--276756	20	2.3	19	89	10	74	54	10	17	17	1.70
276887--276929	20	2.3	19	88	11	63	51	11	16	20	1.75
279144--279208	21	3.1	21	80	6	69	40	15	29	15	1.88
279242--279307	33	2.0	33	90	0	105	28	0	48	22	1.51
281079--281127	19	2.6	19	93	0	80	30	2	10	57	1.43
281242--282888	196	8.5	197	93	4	2818	36	15	16	32	1.90
281242--282888	388	4.2	393	94	3	2830	36	15	16	32	1.90
284319--284380	18	3.4	18	79	0	79	37	8	35	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284319--284392	6	12.3	6	77	0	58	36	8	35	20	1.82
284334--284405	3	24.0	3	75	0	63	36	5	34	23	1.78
284322--284395	36	2.1	36	97	0	139	35	8	35	21	1.83
284322--284392	12	5.9	12	83	0	88	35	8	35	21	1.84
284431--284607	87	2.0	90	96	3	333	22	25	15	36	1.94
285950--286591	179	3.6	182	94	4	1128	34	14	16	33	1.90
289057--289114	25	2.3	25	87	0	80	32	8	15	43	1.77
289462--289524	23	2.8	23	87	2	92	36	6	19	38	1.77
289462--289533	23	3.2	23	82	9	85	34	5	19	40	1.75
290656--290712	23	2.5	23	82	5	71	15	29	12	42	1.84
290700--290752	22	2.4	23	78	12	67	15	9	7	67	1.39
295123--295450	177	1.9	177	83	2	426	36	17	21	24	1.94
295088--295474	59	6.6	59	81	3	384	34	17	22	25	1.96
295482--295758	59	4.7	60	86	3	323	35	16	23	24	1.95
295330--295625	152	1.9	152	84	2	398	35	16	23	24	1.94
295271--295691	211	2.0	211	95	0	761	36	16	23	24	1.94
295703--295984	136	2.1	136	87	2	406	26	18	17	36	1.94
299381--299483	10	9.8	10	72	15	57	5	16	0	76	1.03
304927--305061	58	2.3	58	94	1	245	35	23	20	20	1.96
306402--306446	22	2.0	22	100	0	90	35	17	6	40	1.76
307398--307449	26	2.1	24	85	7	68	50	5	11	32	1.62
310258--310297	16	2.5	16	87	0	53	17	5	7	70	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321500--322063	105	5.4	105	95	0	968	33	25	18	22	1.97
324276--324326	19	2.7	19	75	9	59	21	3	3	70	1.20
324276--324348	38	1.9	38	83	5	94	19	6	2	71	1.21
324404--324443	16	2.5	16	87	0	53	17	5	7	70	1.30
327017--327042	12	2.2	12	100	0	52	15	0	0	84	0.62
329190--329277	29	3.0	29	71	12	90	30	17	5	46	1.71
329193--329338	60	2.5	58	82	4	150	28	21	7	41	1.80
329448--329574	60	2.1	60	85	5	168	34	4	25	35	1.77
329448--329603	60	2.6	60	82	8	167	36	3	24	35	1.74
332375--332437	31	2.0	32	84	9	85	53	4	4	36	1.43
336261--336334	23	3.2	23	72	11	71	32	18	25	22	1.97
340553--340599	16	2.9	16	77	0	58	46	29	17	6	1.72
340679--340717	3	12.7	3	94	5	69	30	2	0	66	1.05
342428--342459	16	2.1	16	88	11	50	25	6	15	53	1.65
350180--350214	15	2.3	15	90	0	52	20	11	0	68	1.20
362225--362286	28	2.2	28	85	0	79	30	33	9	25	1.88
373837--373877	21	2.0	21	90	0	64	29	14	7	48	1.71
382267--382352	44	2.0	44	95	2	156	20	19	27	31	1.97
386487--386523	18	2.1	18	90	10	58	75	0	13	10	1.04
386613--386727	56	2.1	56	100	0	230	37	14	20	26	1.92
388768--388820	14	3.7	14	77	5	52	26	11	7	54	1.62
388753--388820	29	2.4	28	76	13	77	25	11	7	55	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389059--389426	137	2.7	136	83	6	413	28	13	13	44	1.81
391043--391089	20	2.4	19	86	10	67	57	10	17	14	1.65
390831--391303	181	2.6	182	89	0	705	42	13	16	26	1.86
391224--391270	20	2.4	19	82	10	67	53	10	17	19	1.72
391233--391275	20	2.3	19	88	11	63	51	11	16	20	1.75
393500--393564	21	3.1	21	93	0	103	41	10	30	16	1.83
393598--393662	33	2.0	32	90	3	103	27	0	49	23	1.50
395451--395499	19	2.6	19	96	0	89	32	2	10	55	1.45
395620--396552	200	4.7	200	96	0	1699	37	15	16	30	1.90
398578--399514	183	5.1	183	95	0	1671	35	14	16	33	1.89
400559--400652	48	2.0	48	95	0	170	23	13	29	32	1.93
401649--401679	15	2.1	15	93	0	53	29	0	9	61	1.28
412293--412331	2	19.5	2	100	0	78	48	0	0	51	1.00
419722--419761	19	2.2	19	86	4	55	20	5	5	70	1.26
424210--424257	1	48.0	1	78	0	51	89	10	0	0	0.48
424211--424257	17	2.7	17	83	3	67	89	10	0	0	0.49
426906--426961	29	2.0	27	93	6	94	60	3	3	32	1.31
430348--430391	2	22.0	2	100	0	88	50	0	0	50	1.00
431944--432042	45	2.1	46	85	9	130	29	12	20	38	1.88
441684--441723	10	4.3	10	78	15	50	75	0	10	15	1.05
441683--441723	18	2.3	17	84	12	55	73	0	12	14	1.11
441679--441741	18	3.0	21	71	20	51	69	0	17	12	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443090--443161	37	1.9	38	94	2	128	40	18	22	19	1.92
443166--443404	102	2.3	102	85	5	302	29	15	24	30	1.96
443172--443695	55	9.7	55	83	5	465	28	17	24	29	1.97
446901--447020	58	2.1	59	87	4	172	25	14	24	35	1.93
448978--449381	45	9.0	45	85	1	492	40	11	22	26	1.88
458101--458125	11	2.3	11	100	0	50	8	0	0	92	0.40
459067--459114	21	2.3	21	78	7	53	79	4	12	4	1.02
462950--463267	45	7.0	45	84	4	408	40	11	20	26	1.87
462959--463321	45	8.0	45	82	5	167	39	11	20	27	1.88
462950--463355	181	2.2	181	81	6	432	40	11	19	27	1.87
467258--467332	36	2.1	36	90	5	116	40	10	8	41	1.69
480330--480398	21	3.2	21	85	6	84	21	33	26	18	1.97
480318--480399	23	3.7	22	87	4	103	23	31	26	18	1.97
480318--480400	22	3.8	22	82	6	87	22	32	26	18	1.97
482073--482113	21	2.0	21	85	0	55	19	34	9	36	1.85
490945--490974	14	2.1	15	93	6	53	0	10	0	90	0.47
491123--491297	60	2.9	60	88	2	235	34	18	12	34	1.88
494022--494052	15	2.1	15	93	0	53	54	0	0	45	0.99
494942--494982	13	3.0	14	78	7	57	48	19	17	14	1.81
494851--494988	69	2.0	69	98	0	267	41	23	12	23	1.88
497934--497973	21	1.9	21	85	10	55	35	10	2	52	1.48
504727--504756	2	14.5	2	93	6	51	46	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509576--509600	2	12.5	2	100	0	50	52	0	48	0	1.00
511213--511298	29	3.0	29	94	3	147	12	33	31	22	1.91
511357--511441	29	2.9	29	94	0	152	12	37	30	18	1.89
511445--511528	33	2.5	33	88	0	114	9	39	25	26	1.86
511493--511552	23	2.5	24	83	2	77	13	31	30	25	1.93
522303--522354	21	2.5	21	93	0	86	44	1	17	36	1.60
522925--522972	16	3.0	16	84	0	60	18	18	16	45	1.85
523089--523152	28	2.3	28	94	0	110	53	18	4	23	1.64
527016--527427	205	2.0	207	99	0	810	35	11	12	40	1.80
530785--530819	3	11.7	3	100	0	70	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11