genome.fa.s1466.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001466.1 Hibiscus syriacus cultivar Beakdansim tig00002841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1236886

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 558 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298066--298141	31	2.4	33	79	20	92	40	0	5	53	1.23
298116--298159	22	2.0	22	90	0	70	43	2	0	54	1.12
298066--298150	31	2.8	32	77	16	90	42	0	4	52	1.22
317435--317654	109	2.0	108	99	0	431	35	19	25	19	1.95
318529--318564	16	2.2	16	90	0	54	61	5	11	22	1.50
318619--318649	15	2.1	15	93	0	53	54	0	0	45	0.99
322498--322550	22	2.4	22	73	14	56	60	3	3	32	1.32
323534--323578	16	2.8	16	89	0	72	33	15	13	37	1.86
325507--325537	5	6.2	5	100	0	62	38	0	0	61	0.96
327941--328035	26	3.4	28	72	15	79	47	14	7	30	1.72
327935--328132	94	2.1	94	85	1	263	42	16	7	32	1.76
327962--328133	94	1.8	94	92	0	290	41	17	8	32	1.80
327996--328238	133	1.8	131	80	7	285	43	15	6	33	1.74
328090--328207	39	3.0	39	69	16	118	46	15	6	31	1.71
328156--328428	148	1.9	147	83	5	354	42	14	7	35	1.75
328190--328263	26	2.8	26	89	2	112	37	18	10	32	1.86
328057--328288	82	2.9	79	74	17	246	42	15	9	32	1.78
328629--328815	95	2.0	93	90	4	295	38	14	7	39	1.75
328346--328831	168	2.9	169	89	3	715	39	14	7	38	1.74
330577--330607	2	15.5	2	100	0	62	51	0	0	48	1.00
341766--341819	22	2.3	23	78	15	58	48	1	3	46	1.30
351942--351971	15	2.0	15	100	0	60	20	13	20	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352634--352674	8	5.2	8	85	5	57	39	24	12	24	1.89
352636--352665	15	1.9	16	93	6	53	33	23	16	26	1.96
354440--354468	10	2.9	10	100	0	58	0	20	48	31	1.50
355385--355425	19	2.0	21	86	9	59	63	0	7	29	1.21
356493--356570	33	2.4	32	87	4	95	29	19	37	14	1.91
356503--356570	33	2.1	33	91	0	109	32	19	32	16	1.93
356655--356702	22	2.1	23	88	11	73	54	0	2	43	1.12
356914--356955	20	2.1	20	90	0	66	35	14	21	28	1.92
357013--357646	105	6.0	105	96	0	1124	22	18	25	33	1.97
369213--369252	19	2.0	21	85	9	57	65	0	5	30	1.14
370325--370402	33	2.4	32	87	4	95	29	19	37	14	1.91
370335--370402	33	2.1	33	91	0	109	32	19	32	16	1.93
370487--370536	23	2.1	23	89	10	75	54	0	2	44	1.11
372632--372675	20	2.2	20	84	4	54	11	13	13	61	1.57
380042--380092	25	2.0	25	100	0	102	31	17	11	39	1.86
380307--380364	2	29.0	2	96	0	107	48	0	1	50	1.11
384582--384614	15	2.1	16	88	5	50	39	0	3	57	1.14
386834--386896	24	2.6	24	97	2	117	22	12	49	15	1.79
390287--390368	29	2.8	29	96	1	146	31	14	13	40	1.85
390721--390860	36	4.0	34	81	9	158	20	26	21	32	1.97
390724--390860	71	1.9	70	82	10	172	19	25	21	32	1.97
398788--398832	23	2.0	23	95	0	81	53	15	8	22	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399437--399473	19	1.9	19	88	0	56	56	5	0	37	1.22
399719--399768	21	2.4	21	80	3	66	48	6	2	44	1.39
405264--405331	31	2.2	31	89	0	100	41	7	10	41	1.67
406196--406278	42	2.0	42	95	0	148	25	6	25	43	1.77
414911--414967	28	2.0	28	100	0	114	26	17	24	31	1.97
423087--423124	18	2.1	18	95	0	67	36	10	13	39	1.79
425767--426145	193	2.0	189	96	3	706	27	13	13	46	1.80
427935--427964	2	15.0	2	100	0	60	50	0	0	50	1.00
431597--431677	25	3.2	25	86	6	103	30	4	7	56	1.48
431609--431677	25	2.7	25	89	8	104	34	5	8	50	1.57
431597--431677	26	3.2	26	86	10	107	30	4	7	56	1.48
437796--437824	14	2.1	14	100	0	58	37	6	0	55	1.27
438423--438462	12	3.4	11	86	13	53	60	2	0	37	1.11
441839--441899	22	2.8	22	89	0	86	52	3	9	34	1.51
442966--443005	21	1.9	21	85	10	55	55	5	2	37	1.35
443957--443984	2	14.0	2	100	0	56	50	0	0	50	1.00
446713--446741	2	14.5	2	100	0	58	48	0	0	51	1.00
447824--447853	15	2.0	15	100	0	60	13	26	46	13	1.80
462409--462569	32	5.1	32	81	2	155	39	6	9	44	1.63
463073--463101	2	15.0	2	92	7	51	48	0	0	51	1.00
464740--464805	12	5.6	12	85	3	80	10	13	48	27	1.75
464740--464805	23	2.8	24	81	4	80	10	13	48	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464803--464865	24	2.6	25	78	16	71	44	0	0	55	0.99
464904--464945	13	3.2	14	80	12	54	14	11	54	19	1.70
468135--468163	14	2.0	15	93	6	51	41	0	10	48	1.37
469126--469158	2	16.5	2	100	0	66	48	0	0	51	1.00
469160--469199	14	2.9	14	81	3	55	32	0	0	67	0.91
472260--472323	12	5.0	13	80	16	71	76	4	17	1	1.03
472273--472324	27	2.0	25	92	7	86	75	3	17	3	1.11
473445--473539	32	2.9	32	88	1	145	31	12	21	34	1.91
473865--473906	21	2.0	21	95	0	75	38	14	26	21	1.91
474729--474841	37	3.1	37	87	3	165	28	19	12	39	1.88
474727--474831	36	2.9	37	89	1	167	25	20	13	40	1.88
474877--474927	15	3.3	15	71	28	52	23	11	17	47	1.81
474856--474967	36	3.2	35	74	16	108	28	18	12	40	1.87
475035--475373	83	4.1	83	88	1	459	31	27	17	23	1.97
475721--475771	9	6.6	8	77	22	56	25	0	0	74	0.82
475724--475760	3	12.7	3	83	16	51	29	0	0	70	0.88
475823--475904	33	2.5	33	87	0	119	40	19	10	29	1.86
476878--476929	20	2.6	20	96	0	95	46	11	11	30	1.76
487419--487445	2	13.5	2	100	0	54	51	0	0	48	1.00
488001--488147	60	2.5	60	77	6	154	41	3	19	35	1.68
488263--488305	22	2.0	22	85	0	59	23	2	23	51	1.60
488931--488995	28	2.3	28	97	0	121	33	9	16	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505141--505194	26	2.1	26	89	6	83	51	0	1	46	1.11
505348--505385	3	13.0	3	94	5	69	65	0	0	34	0.93
505348--505385	17	2.2	17	95	4	67	65	0	0	34	0.93
510168--510239	24	3.0	24	88	6	103	40	20	1	37	1.62
511076--511126	13	4.0	12	82	12	66	39	3	0	56	1.18
511079--511129	26	2.0	26	88	7	77	41	3	0	54	1.19
518497--518532	19	2.0	19	89	10	58	41	8	11	38	1.71
520856--521054	6	33.2	6	98	0	389	50	33	0	16	1.45
524990--525067	31	2.5	31	87	0	102	35	15	20	28	1.93
535013--535045	17	2.0	17	88	5	50	75	9	3	12	1.14
538446--538607	58	2.8	59	83	2	211	27	27	16	29	1.97
543693--543763	35	2.1	35	97	2	135	23	30	0	45	1.54
546055--546117	21	2.9	21	83	4	72	15	25	38	20	1.92
549926--549965	21	1.9	21	85	10	55	35	10	2	52	1.48
553358--553402	22	2.1	21	83	4	54	62	0	0	37	0.96
556290--556322	15	2.2	15	100	0	66	15	24	33	27	1.95
559793--559943	75	2.0	75	90	0	239	29	29	17	22	1.97
568663--568713	4	12.8	4	79	8	59	47	21	5	25	1.73
569175--569204	8	3.8	8	95	0	51	40	6	13	40	1.71
569196--569220	12	2.1	12	100	0	50	32	8	16	44	1.76
583083--583107	13	1.9	13	100	0	50	56	8	28	8	1.57
585733--585784	20	2.5	21	81	3	61	40	19	23	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585773--585866	20	4.7	20	80	7	100	34	24	18	23	1.96
586422--586463	19	2.2	19	86	0	57	52	26	14	7	1.67
586459--586642	19	10.1	19	77	13	181	11	23	20	44	1.85
586459--586642	33	5.1	38	84	8	181	11	23	20	44	1.85
588614--588702	42	2.1	42	80	0	106	21	38	16	23	1.93
590144--590188	18	2.5	18	88	0	72	13	15	44	26	1.83
591512--591556	20	2.2	20	88	0	63	37	26	17	17	1.93
591820--591863	22	2.0	22	95	0	79	18	15	45	20	1.85
592051--592164	20	5.7	20	82	6	122	24	18	26	30	1.98
592031--592166	41	3.3	41	79	6	159	24	17	25	33	1.97

Tables:   1   2   3   4   5