genome.fa.s1466.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001466.1 Hibiscus syriacus cultivar Beakdansim tig00002841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1236886

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 558 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036398--1036591	20	9.6	20	82	5	221	19	19	25	35	1.95
1036400--1036571	60	2.8	60	84	0	245	19	19	26	34	1.96
1040633--1040739	24	4.5	24	75	0	106	47	16	14	20	1.82
1040633--1040741	48	2.3	48	78	0	128	47	16	15	20	1.82
1043203--1043235	15	2.2	15	94	0	57	21	27	33	18	1.96
1043215--1043264	18	2.6	19	90	6	75	16	26	46	12	1.81
1043209--1043253	13	3.3	13	87	6	54	17	26	42	13	1.86
1043224--1043300	30	2.5	31	85	4	111	14	19	48	18	1.82
1043230--1043305	18	4.6	18	75	18	83	11	19	50	18	1.78
1044680--1044952	137	2.0	137	97	0	521	34	12	10	42	1.77
1046661--1046706	23	2.0	23	100	0	92	26	17	21	34	1.95
1051707--1051784	31	2.5	31	78	0	93	37	20	23	19	1.95
1052952--1053091	69	2.0	70	97	1	264	47	21	13	17	1.81
1053280--1053319	22	1.9	22	90	10	66	62	5	17	15	1.49
1063567--1063599	2	16.5	2	100	0	66	51	0	0	48	1.00
1063859--1064012	60	2.6	59	82	2	191	30	22	6	40	1.79
1063859--1063953	29	3.2	29	67	19	79	32	18	4	44	1.69
1065680--1065804	60	2.1	60	92	0	205	34	19	16	29	1.94
1074027--1074140	60	1.9	60	81	0	138	43	12	10	33	1.76
1079076--1079104	13	2.2	13	100	0	58	31	0	0	68	0.89
1080308--1080444	60	2.3	60	78	7	145	35	18	15	31	1.92
1101316--1101358	16	2.9	15	82	6	52	41	18	0	39	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1101552--1101582	16	1.9	16	93	0	53	41	0	0	58	0.98
1106484--1106680	103	1.9	103	98	0	385	35	17	25	21	1.95
1117576--1117607	12	2.7	12	95	0	55	37	25	6	31	1.81
1121748--1121797	25	2.0	25	100	0	100	44	16	12	28	1.83
1123961--1124285	164	2.0	164	93	1	562	27	19	19	33	1.96
1130267--1130374	40	2.7	40	81	8	110	40	15	11	32	1.83
1139125--1139201	37	2.1	37	85	4	102	48	1	3	46	1.28
1139347--1139384	20	1.9	20	88	0	58	21	23	10	44	1.83
1146680--1146731	27	2.0	27	84	3	70	15	26	13	44	1.84
1146826--1146919	29	3.2	29	70	19	95	41	12	23	22	1.88
1146813--1146949	59	2.3	59	87	0	193	38	16	24	20	1.93
1151107--1151187	22	3.6	22	96	1	144	24	29	27	18	1.98
1151121--1151183	10	5.5	13	65	27	52	26	26	26	19	1.99
1152867--1152911	21	2.1	21	87	0	63	15	24	28	31	1.96
1156080--1156160	22	3.6	22	96	1	144	24	29	27	18	1.98
1156094--1156156	10	5.5	13	65	27	52	26	26	26	19	1.99
1156808--1156886	2	40.0	2	97	2	151	50	0	0	49	1.00
1157896--1157940	21	2.1	21	87	0	63	15	24	28	31	1.96
1165349--1165422	36	2.1	36	100	0	148	24	16	22	36	1.94
1165840--1166139	145	2.0	148	97	2	570	34	20	17	27	1.95
1166387--1166432	22	2.1	21	84	4	56	32	21	6	39	1.79
1169879--1169923	23	2.0	23	86	0	63	26	28	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169902--1170205	149	2.0	149	99	0	599	34	20	17	27	1.95
1175627--1175659	16	2.1	16	88	5	50	33	0	0	66	0.92
1187366--1187428	20	3.2	20	93	0	108	41	20	17	20	1.91
1187600--1187648	20	2.5	20	82	0	71	22	18	20	38	1.93
1187727--1187852	56	2.2	56	87	0	189	26	15	23	34	1.94
1187941--1188005	20	3.2	20	73	0	67	23	16	15	44	1.86
1187950--1188031	40	2.0	40	88	4	121	25	17	13	43	1.85
1188007--1188073	20	3.3	20	80	2	71	19	17	23	38	1.93
1200327--1200486	80	2.0	80	97	0	302	35	10	11	43	1.74
1201600--1201651	2	26.0	2	100	0	104	50	0	0	50	1.00
1207189--1207227	19	2.0	19	85	5	51	10	12	5	71	1.28
1207516--1207738	42	5.3	41	93	0	338	20	17	24	36	1.94
1207506--1207741	84	2.8	84	92	1	409	21	18	24	36	1.95
1208460--1208632	21	8.4	21	70	17	123	37	21	19	21	1.94
1208460--1208592	63	2.1	61	91	2	221	38	20	18	22	1.94
1208523--1208651	40	3.2	40	95	2	222	36	23	19	20	1.95
1208544--1208657	21	5.6	21	74	8	110	35	25	20	19	1.96
1208671--1208718	21	2.3	21	92	0	78	18	18	31	31	1.95
1210265--1210311	22	2.1	22	88	4	67	46	0	0	53	1.00
1210279--1210427	28	5.1	28	74	20	110	49	0	1	48	1.09
1210398--1210447	18	2.9	17	82	5	57	44	2	0	54	1.11
1210278--1210431	58	2.6	59	76	13	165	50	0	1	48	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1210276--1210445	62	2.9	58	75	15	154	49	0	1	48	1.13
1210584--1210623	21	2.0	20	85	5	53	55	0	0	45	0.99
1210833--1210920	30	3.0	30	83	3	108	40	13	4	40	1.65
1210833--1210884	15	3.5	15	68	5	52	36	15	5	42	1.71
1211623--1211666	21	2.1	21	83	8	54	29	25	27	18	1.98
1211695--1211738	22	2.0	22	81	4	52	31	31	22	13	1.93
1221703--1221745	20	2.2	20	86	0	59	62	2	6	27	1.33
1229401--1229478	31	2.6	30	82	9	90	32	17	14	35	1.90
1233073--1233124	2	26.0	2	84	0	59	0	9	50	40	1.35
1233074--1233122	12	3.9	12	87	10	71	0	10	51	38	1.36
1233073--1233125	14	3.8	14	92	0	88	0	11	49	39	1.39
1236431--1236465	18	2.0	17	88	5	52	40	0	5	54	1.24

Tables:   1   2   3   4   5

The End!