genome.fa.s1497.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001497.1 Hibiscus syriacus cultivar Beakdansim tig00002919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1780709

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 861 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
805--897	21	4.5	21	78	4	100	39	18	24	17	1.91
805--897	41	2.3	41	100	0	186	39	18	24	17	1.91
824--958	41	3.3	41	82	6	132	38	20	21	19	1.94
886--999	20	5.7	20	79	4	95	35	23	17	23	1.95
1157--1198	20	2.0	20	86	4	57	21	45	16	16	1.86
1401--1451	19	2.7	19	100	0	102	41	27	21	9	1.84
1477--1514	20	1.9	20	88	0	58	13	15	21	50	1.78
3230--3268	18	2.2	18	95	0	69	0	2	23	74	0.94
3323--3387	19	3.4	19	78	4	76	40	24	20	15	1.91
3377--3434	14	3.9	14	79	16	71	48	24	17	10	1.78
3361--3451	32	2.8	33	93	3	157	48	21	17	12	1.80
3323--3456	19	7.6	19	71	18	74	43	23	20	13	1.87
3463--3540	33	2.4	33	89	4	115	11	20	21	46	1.82
3525--3579	20	2.8	19	89	5	83	16	25	23	34	1.95
5611--5665	20	2.8	20	94	0	92	18	23	23	34	1.96
6709--6752	22	2.0	23	86	4	63	25	18	22	34	1.96
6925--6949	12	2.1	12	100	0	50	72	0	28	0	0.86
9177--9307	19	7.7	19	66	23	94	42	19	22	14	1.88
9177--9303	33	3.8	33	88	4	202	42	19	22	14	1.88
9178--9310	66	2.0	66	97	0	248	41	19	22	16	1.90
9307--9378	19	4.1	17	73	20	60	13	20	18	47	1.82
10891--10971	41	2.0	41	85	2	108	24	17	35	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12971--13063	33	2.8	33	86	1	125	41	26	20	10	1.85
13036--13124	19	4.7	19	95	0	160	47	21	20	11	1.81
13120--13200	19	4.5	19	74	16	73	11	17	24	46	1.80
13714--13807	20	4.7	20	78	2	80	24	17	23	35	1.95
13733--13810	41	1.9	41	83	0	102	23	15	20	41	1.90
21181--21232	19	2.6	19	77	17	61	36	1	7	53	1.41
29798--29931	67	2.0	67	100	0	268	28	23	8	38	1.85
30052--30181	65	2.0	65	96	0	242	30	14	16	39	1.88
34094--34126	17	1.9	17	93	0	57	48	0	6	45	1.27
35228--35277	6	8.3	6	80	8	57	62	12	26	0	1.30
35226--35277	18	2.9	18	94	0	86	59	13	26	0	1.34
42305--42330	3	8.7	3	100	0	52	69	0	0	30	0.89
42354--42395	8	5.1	8	82	5	57	85	0	4	9	0.72
42357--42408	25	2.0	26	92	3	88	80	0	7	11	0.89
42431--42489	22	2.7	22	75	14	52	71	1	8	18	1.20
43710--44014	36	8.5	37	75	12	203	46	6	2	44	1.44
43710--44012	72	4.3	69	77	14	269	46	6	2	44	1.44
43999--44028	2	15.5	2	93	6	53	50	0	0	50	1.00
43710--44016	38	8.6	37	73	19	233	46	6	2	44	1.44
44441--45384	84	11.3	82	79	7	877	24	20	24	30	1.99
44431--45362	249	3.7	247	85	4	1185	24	20	25	30	1.99
44391--45384	165	6.0	167	81	6	955	24	20	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48410--48454	19	2.4	19	96	3	83	68	8	11	11	1.39
50121--50158	3	12.7	3	100	0	76	68	0	0	31	0.90
50118--50223	9	11.8	9	74	10	56	70	1	3	23	1.13
50185--50242	26	2.2	26	84	3	80	77	0	8	13	0.98
50182--50224	17	2.5	18	77	11	54	83	0	4	11	0.78
51486--51795	100	3.0	102	85	6	383	33	25	17	22	1.96
52343--52441	34	2.8	34	87	7	128	43	13	11	32	1.79
52339--52477	37	3.9	36	80	9	140	41	13	12	32	1.82
53070--53125	23	2.6	20	74	20	51	28	3	0	67	1.07
53011--53159	76	2.0	72	80	17	162	25	8	2	63	1.35
53840--53984	33	4.3	32	72	19	100	48	5	2	44	1.37
53834--54134	36	8.4	36	76	16	238	45	6	2	44	1.45
54132--54199	34	2.0	34	82	5	84	54	1	0	44	1.09
60903--60938	18	2.0	18	89	10	56	58	0	2	38	1.13
71206--71365	55	2.9	55	94	0	266	35	15	21	27	1.94
76149--76220	30	2.4	30	92	0	117	30	25	20	23	1.99
76210--76457	31	7.9	31	73	12	202	30	17	18	33	1.94
76260--76440	32	5.7	31	79	10	197	30	17	17	34	1.93
76232--76460	63	3.7	63	95	0	397	31	17	17	34	1.93
76208--76459	94	2.7	95	75	11	232	30	17	17	33	1.94
77613--77769	64	2.5	64	76	12	153	26	19	20	33	1.96
93113--93188	38	2.0	37	97	2	143	40	7	13	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94143--94183	21	2.0	21	85	4	57	24	7	4	63	1.40
100184--100241	15	3.6	15	73	22	55	62	1	1	34	1.16
100669--100824	21	7.7	20	72	7	82	38	25	17	19	1.93
100791--101060	20	13.5	20	81	6	269	37	25	17	20	1.94
101743--101788	24	2.0	23	87	12	67	26	15	21	36	1.93
104253--104376	19	6.7	19	84	10	168	44	16	22	16	1.86
104223--104338	57	2.1	54	86	12	159	46	18	19	15	1.84
104253--104376	52	2.3	54	86	8	162	44	16	22	16	1.86
104385--104481	19	5.4	19	84	13	134	14	22	17	45	1.85
104366--104481	51	2.2	53	95	3	209	13	25	18	43	1.86
104588--104624	14	2.6	14	91	0	65	45	21	0	32	1.52
106019--106078	20	2.9	21	75	2	68	20	18	38	23	1.93
106591--106647	14	3.7	14	77	20	60	45	22	21	10	1.82
106572--106664	33	2.8	33	95	0	168	47	21	20	10	1.80
106535--106669	19	7.6	19	76	16	128	45	23	19	11	1.82
106665--106793	19	7.3	19	75	17	125	8	17	28	45	1.77
106665--106756	33	2.8	33	93	3	150	7	18	28	45	1.76
106841--107122	93	3.1	93	98	1	541	45	19	12	22	1.83
108824--108913	14	5.7	14	69	23	63	44	22	23	10	1.82
108816--108930	33	3.5	33	97	0	221	46	20	22	10	1.80
108838--108935	19	5.7	19	69	22	90	44	21	22	11	1.83
108947--109003	14	3.7	14	75	20	60	8	24	22	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108931--109011	33	2.5	33	95	0	144	8	22	22	46	1.78
108988--109063	21	3.7	21	83	3	109	11	25	17	46	1.82
108987--109064	41	1.9	41	97	0	147	12	25	16	44	1.83
109143--109213	33	2.2	33	92	0	115	47	18	22	11	1.80
109403--109462	22	2.7	22	100	0	120	26	13	45	15	1.83
109617--109790	20	8.6	20	83	6	199	18	18	27	35	1.94
109777--109859	21	4.0	21	73	6	78	25	16	24	33	1.96
109757--109855	42	2.4	43	77	11	100	21	18	23	37	1.94
111229--111300	31	2.3	31	88	4	101	27	2	16	52	1.57
115942--115987	18	2.6	18	100	0	92	45	4	4	45	1.43
116254--116305	27	1.9	27	84	7	70	36	7	7	48	1.61
117628--117653	2	13.0	2	100	0	52	50	0	0	50	1.00
118029--118066	16	2.4	16	86	8	51	39	0	0	60	0.97
118042--118132	11	7.8	12	71	21	70	38	1	2	58	1.18
118043--118132	23	3.9	23	78	8	94	37	1	2	58	1.17
118341--118382	2	21.0	2	100	0	84	50	0	0	50	1.00
119604--119678	27	2.8	27	97	2	143	70	4	6	18	1.25
123898--123932	2	18.0	2	94	5	63	51	0	0	48	1.00
124294--124331	2	19.0	2	100	0	76	50	0	0	50	1.00
127294--127457	60	2.8	60	81	4	197	42	5	19	32	1.74
129325--129402	3	26.3	3	94	2	140	34	1	0	64	1.02
129860--129895	16	2.3	15	90	4	54	69	2	27	0	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130716--130766	20	2.5	20	83	3	57	39	1	1	56	1.22
142486--142530	16	2.8	16	83	10	56	28	8	6	55	1.56
143276--144172	84	10.7	84	94	3	1565	28	14	22	35	1.93
144978--145022	24	1.9	23	82	13	56	48	6	26	17	1.72
144843--145682	114	7.4	113	91	2	1272	36	14	19	29	1.91
144829--145682	227	3.7	227	93	2	1313	36	13	19	29	1.91
144821--145682	341	2.5	341	91	2	1365	36	14	19	29	1.91
145829--145892	3	21.3	3	93	0	110	34	3	0	62	1.11
145888--145912	11	2.3	11	100	0	50	52	0	0	48	1.00
146454--146489	16	2.3	15	90	4	54	69	2	27	0	1.02

Tables:   1   2   3   4   5   6   7   8