genome.fa.s1497.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001497.1 Hibiscus syriacus cultivar Beakdansim tig00002919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1780709

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 861 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147310--147350	20	2.0	21	85	4	57	36	2	2	58	1.24
150478--150528	2	25.5	2	100	0	102	49	0	0	50	1.00
150971--151044	20	3.5	20	70	14	60	40	4	0	55	1.19
160473--160512	20	2.1	19	85	4	53	45	15	7	32	1.74
165775--165808	18	1.9	18	88	5	52	26	32	26	14	1.95
167968--168188	80	2.8	80	95	1	392	37	13	9	39	1.77
168547--168895	20	17.5	20	84	4	418	34	26	18	20	1.95
169569--169615	24	2.0	24	87	8	69	25	14	21	38	1.92
169790--169814	12	2.1	12	100	0	50	72	0	28	0	0.86
172119--172444	19	18.4	19	80	15	405	47	17	20	14	1.82
172119--172444	33	9.2	34	82	13	321	47	17	20	14	1.82
172147--172466	161	2.0	157	93	3	552	46	16	21	14	1.83
172147--172466	52	6.0	52	93	4	550	46	16	21	14	1.83
172473--172574	19	5.6	19	85	12	151	14	23	17	44	1.86
172681--172717	14	2.6	14	91	0	65	45	21	0	32	1.52
172712--172784	12	6.0	12	67	20	53	57	16	1	24	1.47
172698--172770	38	1.9	38	97	0	137	53	16	1	28	1.51
174587--174721	19	7.6	19	76	16	137	45	24	19	10	1.81
174643--174699	14	3.7	14	77	20	60	45	24	21	8	1.80
174624--174716	33	2.8	33	98	0	177	47	22	20	9	1.79
174587--174721	52	2.5	54	75	18	131	45	24	19	10	1.81
174717--174845	19	7.3	19	75	17	125	8	17	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174717--174808	33	2.8	33	93	3	150	7	18	28	45	1.76
174893--175267	93	4.1	93	97	1	709	45	18	12	22	1.84
174893--175267	185	2.0	186	97	1	709	45	18	12	22	1.84
176974--177063	14	5.7	14	74	23	81	42	23	25	8	1.83
176966--177080	33	3.5	33	95	0	212	45	20	24	9	1.81
176973--177085	19	6.8	18	72	23	88	43	22	24	9	1.83
177097--177151	14	3.6	14	73	21	56	9	27	23	40	1.85
177272--177342	33	2.2	33	92	0	115	47	18	22	11	1.80
177524--177578	22	2.5	22	81	0	74	20	16	40	23	1.91
177724--177917	20	9.6	20	82	5	221	19	19	25	35	1.95
177724--177917	60	3.2	60	83	0	253	19	19	25	35	1.95
177910--177986	21	3.7	20	70	13	57	27	16	23	32	1.96
177972--178023	20	2.6	20	96	0	95	21	13	26	38	1.90
178977--179027	19	2.7	19	77	17	52	7	19	0	72	1.08
179103--179258	84	1.8	85	94	1	278	39	9	11	39	1.74
179178--179364	99	1.9	99	92	0	311	36	8	10	44	1.69
181109--181142	16	2.1	16	88	5	50	73	2	2	20	1.09
183296--183516	113	1.9	114	95	0	399	48	17	11	22	1.79
185849--185962	35	3.2	35	87	7	167	42	20	4	32	1.71
185900--185960	21	3.2	21	65	29	64	42	21	4	31	1.74
185851--185995	35	4.1	35	78	13	136	42	18	5	33	1.74
190450--190569	37	3.3	36	83	8	147	43	20	5	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190453--190562	35	3.1	34	85	8	132	43	20	5	30	1.74
195024--195333	33	9.4	33	93	0	406	25	13	50	10	1.74
198406--198450	17	2.7	18	86	10	60	44	0	0	55	0.99
215461--215520	23	2.6	23	86	0	75	41	8	15	35	1.77
215637--215686	23	2.2	23	88	0	73	38	10	18	34	1.84
215637--215693	23	2.5	23	82	0	60	42	8	15	33	1.78
215441--215702	89	3.0	87	87	4	391	43	9	13	33	1.77
216702--216872	60	2.8	60	82	1	200	32	18	4	44	1.71
222735--222828	38	2.5	38	84	3	127	38	38	11	11	1.78
225267--225643	183	2.1	183	91	5	604	45	8	3	42	1.49
225600--225659	26	2.3	25	80	8	66	46	0	3	50	1.18
226702--226732	16	2.0	15	93	6	53	70	6	0	22	1.09
236261--236321	18	3.6	16	76	12	59	65	1	0	32	1.02
236262--236337	35	2.2	34	88	6	109	61	1	0	36	1.04
236255--236334	36	2.3	35	85	12	110	62	1	0	36	1.03
236613--236646	2	17.0	2	100	0	68	50	0	0	50	1.00
236831--236907	30	2.6	30	97	0	145	55	3	11	28	1.53
245680--245710	2	15.5	2	100	0	62	51	0	0	48	1.00
247643--247701	30	2.0	30	89	0	91	33	1	13	50	1.52
254376--254537	79	2.0	80	87	5	231	37	13	10	38	1.79
258919--259087	88	1.9	88	98	0	329	26	12	21	39	1.89
268215--268246	15	2.1	15	100	0	64	25	6	28	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271119--271168	25	2.0	25	100	0	100	24	32	20	24	1.98
281281--281344	32	2.0	33	87	9	96	35	9	7	46	1.65
287528--287556	7	4.1	7	100	0	58	13	27	13	44	1.82
300088--300127	21	1.9	21	85	10	55	35	10	2	52	1.48
306666--306701	16	2.2	17	95	5	65	44	19	0	36	1.51
309828--309877	26	1.9	26	100	0	100	20	20	50	10	1.76
309827--309883	26	2.2	26	90	0	96	21	22	47	8	1.78
312139--312248	54	2.0	54	96	0	202	37	14	6	41	1.71
320200--320233	16	2.1	16	94	0	59	32	26	8	32	1.87
331530--332275	371	2.0	370	94	5	1317	32	13	15	38	1.87
331624--332364	371	2.0	369	85	7	1002	34	14	15	35	1.89
346802--346849	25	1.9	25	95	0	87	35	8	2	54	1.42
348870--348927	28	2.1	28	83	0	71	12	12	20	55	1.68
351432--351490	14	4.4	14	75	16	54	62	1	1	33	1.15
353856--354124	135	2.0	135	85	1	360	28	25	17	28	1.98
361675--361702	14	2.0	14	100	0	56	42	21	28	7	1.79
367548--367584	20	1.9	19	89	10	58	45	10	24	18	1.81
370244--370277	17	2.0	17	94	0	59	55	26	0	17	1.42
372233--372272	21	1.9	21	89	0	62	10	25	40	25	1.86
372253--372315	20	2.9	21	79	9	65	15	25	34	23	1.95
394199--394254	25	2.2	26	84	6	71	75	5	10	8	1.19
394312--394343	17	1.9	16	93	6	55	65	6	6	21	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394450--394481	2	16.0	2	100	0	64	50	0	0	50	1.00
394546--394570	2	12.5	2	100	0	50	52	0	0	48	1.00
394513--394556	21	2.2	20	87	4	61	65	2	2	29	1.16
394602--394642	19	2.2	19	86	4	57	60	2	0	36	1.10
394742--394788	2	24.0	2	95	4	87	48	0	0	51	1.00
394889--394920	17	1.9	16	93	6	55	21	6	6	65	1.38
397783--398451	98	6.9	98	94	2	1154	21	20	23	34	1.97
397530--398439	292	3.1	288	91	4	1347	22	19	23	34	1.96
397530--398451	390	2.3	393	89	5	1371	22	19	23	34	1.96
398290--398446	43	3.4	43	65	19	116	19	20	24	35	1.96
407765--407796	17	1.9	16	93	6	55	21	6	6	65	1.38
407854--407903	25	2.0	25	84	0	64	8	16	6	70	1.32
415554--415588	16	2.2	16	100	0	70	40	5	22	31	1.78
415958--416010	21	2.5	21	84	0	70	20	26	18	33	1.96
416000--416093	20	4.7	20	86	2	143	38	20	21	20	1.94
416000--416093	41	2.3	40	89	3	143	38	20	21	20	1.94
416568--416647	20	4.1	19	78	12	99	12	21	18	47	1.81
418340--418810	94	5.1	94	93	2	756	21	11	19	47	1.80
418902--418963	20	3.2	20	86	4	99	50	17	22	9	1.75
418926--419023	33	2.9	33	86	1	142	46	25	20	7	1.75
418992--419029	20	1.9	20	100	0	76	50	28	15	5	1.66
419035--419150	19	6.3	19	75	11	125	9	21	19	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419035--419150	33	3.2	38	81	7	125	9	21	19	49	1.77
419179--419226	25	1.9	25	95	0	87	29	0	33	37	1.58
419551--419677	33	3.8	33	94	0	218	13	24	17	44	1.84
419586--419697	19	6.4	19	72	20	100	14	23	18	43	1.86
419603--419659	14	3.7	14	72	20	51	14	24	17	43	1.86
419650--419743	20	4.7	20	72	13	68	21	20	23	35	1.96
421988--422026	14	2.7	14	80	4	51	7	17	20	53	1.68
422217--422270	24	2.2	24	96	0	99	42	20	16	20	1.89
422217--422284	24	2.8	24	88	0	73	39	20	16	23	1.91
423110--423240	21	6.4	20	75	9	88	31	19	20	29	1.97

Tables:   1   2   3   4   5   6   7   8