genome.fa.s1523.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001523.1 Hibiscus syriacus cultivar Beakdansim tig00002982_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1321709

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 665 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229695--229734	21	1.9	21	100	0	80	50	0	20	30	1.49
231331--231363	17	2.0	17	88	5	50	6	12	21	60	1.53
231517--231837	41	7.8	42	80	6	345	33	19	19	27	1.96
231517--231868	83	4.3	81	84	5	399	32	19	19	27	1.96
234474--234566	21	4.5	21	78	4	100	39	18	24	17	1.91
234474--234566	41	2.3	41	100	0	186	39	18	24	17	1.91
234493--234627	41	3.3	41	82	6	132	37	21	21	19	1.94
234555--234669	20	5.7	20	82	6	115	31	26	18	24	1.97
234552--234689	41	3.4	41	79	6	154	34	24	17	23	1.96
235164--235201	20	1.9	20	88	0	58	13	15	21	50	1.78
235338--235392	25	2.2	24	78	15	58	20	9	18	52	1.71
236439--236483	18	2.5	18	88	0	72	26	44	15	13	1.83
236976--237020	20	2.3	20	80	3	56	40	20	22	17	1.92
237020--237083	14	4.4	14	80	16	76	50	23	15	10	1.76
237004--237094	32	2.8	33	93	3	157	48	21	17	12	1.80
237111--237168	14	3.9	14	79	16	71	10	17	24	48	1.78
237106--237180	32	2.3	33	95	2	134	10	18	22	48	1.79
237157--237224	20	3.5	19	78	6	73	14	22	23	39	1.91
239093--239127	14	2.5	14	85	0	52	31	0	20	48	1.50
239246--239313	19	3.8	19	85	14	101	47	17	22	13	1.82
239332--239409	20	3.9	20	100	0	156	15	23	25	35	1.94
240465--240518	24	2.2	24	90	0	81	24	16	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240693--240717	12	2.1	12	100	0	50	72	0	28	0	0.86
242986--243050	19	3.7	19	68	19	59	43	18	24	13	1.87
243046--243087	19	2.2	19	86	0	57	19	19	21	40	1.92
243195--243231	14	2.6	14	91	0	65	45	24	0	29	1.53
244589--244655	21	3.2	21	70	8	64	20	20	34	23	1.97
244589--244682	42	2.2	42	83	3	109	22	21	34	22	1.97
244628--244707	42	1.9	42	82	5	99	23	17	37	21	1.94
246705--246865	20	8.8	19	68	19	74	44	21	21	13	1.85
246730--246828	33	3.0	33	83	1	117	40	24	22	13	1.89
246806--246870	19	3.4	19	89	4	103	47	21	20	10	1.80
247464--247577	20	5.7	20	82	6	122	25	19	23	31	1.98
247464--247580	61	1.9	61	87	0	171	24	18	23	33	1.97
247464--247598	61	2.2	61	82	2	164	23	20	22	32	1.98
248832--248860	11	2.6	11	100	0	58	75	0	24	0	0.80
255955--256447	260	1.9	260	86	1	702	34	17	19	28	1.95
263114--263166	23	2.4	22	78	12	54	28	5	3	62	1.35
266175--266395	115	1.9	116	86	6	315	39	20	15	24	1.91
273308--273351	2	22.0	2	100	0	88	50	0	0	50	1.00
273852--273885	14	2.4	15	90	9	54	58	5	8	26	1.51
275135--275181	3	15.7	3	100	0	94	68	0	0	31	0.90
277307--277507	110	1.8	110	84	2	278	25	18	22	32	1.97
277668--277797	27	5.0	27	79	9	153	46	23	7	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277676--277799	52	2.4	52	87	2	187	45	23	8	22	1.78
280498--280622	51	2.5	51	81	3	153	34	32	5	28	1.80
281099--281157	25	2.4	25	85	0	82	50	20	11	16	1.76
284358--284397	17	2.4	16	84	12	53	52	10	0	37	1.35
286395--286419	9	2.8	9	100	0	50	76	0	0	24	0.80
289277--289317	20	2.1	20	86	4	57	39	7	7	46	1.60
291046--291088	22	1.9	23	90	4	70	48	2	0	48	1.14
291472--291516	23	1.9	24	86	4	65	51	0	2	46	1.13
310363--310388	13	2.0	13	100	0	52	76	0	7	15	0.99
310962--311015	25	2.2	24	77	9	56	70	7	9	12	1.33
311957--312284	5	66.6	5	94	5	589	40	0	0	59	0.97
315029--315149	57	2.1	57	89	6	183	39	24	6	28	1.80
315023--315149	29	4.5	28	88	4	184	40	23	6	29	1.79
322229--322356	29	4.4	29	84	3	150	39	25	3	30	1.74
328177--328280	31	3.4	31	82	7	122	48	13	13	25	1.79
331719--331757	2	20.5	2	89	10	64	53	0	0	46	1.00
331721--331764	14	3.4	13	90	6	63	54	0	2	43	1.12
333407--333863	135	3.4	133	89	2	648	32	16	20	30	1.95
334413--334458	21	2.2	21	100	0	92	26	23	19	30	1.98
339721--339916	89	2.2	91	82	9	242	20	25	25	28	1.99
368604--369226	82	7.8	82	85	6	846	28	23	13	34	1.93
368718--368825	33	3.2	33	67	14	92	29	25	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368758--369226	161	2.9	162	90	1	715	27	23	13	34	1.93
368648--369226	243	2.4	234	90	3	892	27	23	14	34	1.93
369315--369440	54	2.4	54	79	4	139	37	18	14	30	1.90
376892--376917	11	2.4	11	100	0	52	69	0	0	30	0.89
384091--384291	99	2.0	99	88	3	298	41	11	11	35	1.78
384210--384355	75	2.0	74	88	1	220	40	11	13	34	1.81
384111--384437	173	1.9	173	88	3	496	39	13	12	34	1.82
386897--387097	95	2.1	95	89	3	307	32	16	24	25	1.96
387435--387763	59	5.7	58	89	1	426	32	14	18	34	1.91
387428--387763	116	2.9	115	85	3	422	32	14	18	34	1.91
391457--391981	46	11.4	46	92	0	816	42	14	20	23	1.88
397748--398130	46	8.3	46	89	0	559	42	14	19	23	1.88
397870--397937	23	3.0	23	69	16	68	48	11	19	20	1.80
397856--397927	23	3.2	21	67	14	54	41	13	22	22	1.89
403178--403220	13	3.2	13	83	6	59	37	25	23	13	1.92
408715--408779	33	2.0	33	84	6	87	56	3	0	40	1.15
412102--412134	15	2.2	15	94	0	57	54	0	0	45	0.99
423268--423294	2	13.5	2	100	0	54	48	0	0	51	1.00
428259--428330	17	4.2	17	75	10	58	43	5	12	38	1.66
428286--428329	18	2.5	18	85	10	56	45	9	9	36	1.68
433447--433472	11	2.4	11	100	0	52	15	0	0	84	0.62
434769--434840	17	4.2	18	78	7	62	41	5	15	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434796--434839	18	2.5	18	85	10	56	45	9	9	36	1.68
440977--441022	21	2.1	22	88	8	67	71	0	4	23	1.03
440977--441022	22	2.0	23	83	4	58	71	0	4	23	1.03
441063--441106	22	2.0	23	82	13	56	70	0	9	20	1.14
442245--442296	24	2.2	23	83	12	70	34	13	7	44	1.72
447205--447268	30	2.1	31	85	2	85	25	4	40	29	1.76
451112--451170	21	2.7	22	76	5	75	22	25	20	32	1.98
451155--451288	20	6.7	20	80	6	128	30	22	21	25	1.99
451155--451285	40	3.3	40	86	2	165	31	22	21	25	1.98
452100--452153	24	2.2	24	90	0	81	22	18	18	40	1.91
452343--452379	14	2.6	14	91	4	56	51	21	21	5	1.68
454412--454455	12	3.6	12	84	3	52	54	25	4	15	1.60
454633--454987	20	18.7	20	76	11	282	36	21	18	22	1.95
454658--454874	54	3.9	54	81	6	220	37	22	19	20	1.94
455122--455201	30	2.4	34	80	20	114	55	15	3	26	1.57
455137--455202	30	2.2	30	100	0	132	54	13	3	28	1.54
457102--457147	20	2.4	19	89	7	67	39	28	17	15	1.90
457211--457278	20	3.4	20	87	0	91	19	23	25	32	1.97
457426--457475	18	2.8	18	96	0	91	40	6	20	34	1.77
459202--459297	20	4.8	20	78	7	97	47	20	16	14	1.82
459914--459966	20	2.7	20	87	0	79	30	20	22	26	1.98
459951--460027	20	3.8	20	71	6	75	23	19	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459936--460032	40	2.4	40	84	0	140	23	18	20	37	1.94
461092--461132	21	2.0	21	85	0	55	39	26	12	21	1.89
462327--462365	19	2.1	19	85	4	53	48	15	5	30	1.66
463981--464033	20	2.7	20	84	0	70	37	28	16	16	1.91
464040--464077	18	2.1	19	85	5	51	21	26	15	36	1.93
468076--468146	20	3.5	20	94	0	115	35	39	18	7	1.78
470845--470898	6	8.8	6	80	11	65	81	0	3	14	0.82
470834--470933	8	12.0	8	80	12	78	80	0	11	9	0.92
472946--473157	64	3.3	63	80	5	230	33	20	17	27	1.96
473822--473885	30	2.1	30	85	0	83	18	18	28	34	1.95

Tables:   1   2   3   4   5   6