genome.fa.s1523.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001523.1 Hibiscus syriacus cultivar Beakdansim tig00002982_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1321709

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 665 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1168150--1168188	16	2.5	16	87	4	53	30	7	0	61	1.24
1168156--1168201	3	15.7	3	78	13	51	28	4	0	67	1.10
1168156--1168192	19	1.9	19	88	0	56	29	5	0	64	1.15
1169032--1169205	54	3.3	54	85	1	208	38	13	23	24	1.91
1170297--1170367	20	3.3	20	65	24	54	22	26	19	30	1.98
1170262--1170962	45	15.7	45	91	1	1056	25	21	19	32	1.97
1170657--1170727	20	3.3	20	65	24	54	22	25	19	32	1.98
1171193--1171231	3	13.0	3	100	0	78	33	0	0	66	0.92
1171927--1171978	25	2.1	25	85	7	70	21	21	44	13	1.86
1172542--1172583	18	2.4	17	81	18	50	16	9	2	71	1.23
1178092--1178139	20	2.4	20	89	0	78	58	2	12	27	1.46
1180247--1181006	137	5.5	137	84	1	905	25	20	20	34	1.96
1181960--1182019	21	2.8	20	82	5	66	25	21	26	26	2.00
1182015--1182102	42	2.1	41	85	4	122	28	20	27	23	1.99
1183932--1183979	22	2.2	22	88	7	71	60	6	2	31	1.33
1184971--1185176	112	1.8	114	96	2	389	41	6	21	29	1.79
1186256--1186321	31	2.1	31	85	0	87	43	18	9	28	1.80
1186256--1186380	31	4.1	31	77	5	83	40	17	12	29	1.86
1186353--1186466	35	3.3	35	82	0	129	38	16	13	31	1.87
1196367--1196416	20	2.5	20	86	3	64	32	16	20	32	1.94
1197356--1197412	13	4.5	13	78	8	55	31	17	17	33	1.93
1197388--1197631	85	2.9	83	79	7	269	33	19	15	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1197659--1197717	2	29.5	2	100	0	118	49	0	0	50	1.00
1204433--1204473	21	1.9	22	85	5	57	26	0	65	7	1.18
1226601--1226637	20	1.9	18	89	10	56	40	0	5	54	1.24
1226681--1226720	21	2.0	20	85	5	53	32	5	5	57	1.42
1226830--1226868	20	2.0	20	89	0	60	38	20	12	28	1.89
1233732--1233768	14	2.6	14	100	0	74	37	21	16	24	1.93
1236865--1236896	16	2.0	16	93	0	55	46	12	12	28	1.78
1244196--1244227	16	2.0	16	93	0	55	46	12	12	28	1.78
1246389--1246436	21	2.3	21	100	0	96	20	29	14	35	1.93
1248384--1248447	22	2.7	23	75	17	67	48	9	3	39	1.51
1248422--1248515	30	3.2	30	81	1	118	41	7	6	44	1.58
1248443--1248495	16	3.4	16	74	10	56	39	7	7	45	1.61
1248422--1248501	14	5.3	15	73	10	74	41	7	6	45	1.58
1250406--1250437	11	2.8	12	86	13	50	81	6	0	12	0.87
1251177--1251282	32	3.3	32	80	8	108	52	7	14	25	1.67
1251247--1251309	27	2.3	26	76	12	65	50	4	17	26	1.66
1252671--1252773	3	35.0	3	88	3	147	61	0	1	36	1.07
1253053--1253485	61	7.1	61	65	9	222	26	13	24	36	1.92
1253006--1253485	121	4.0	121	82	3	552	26	14	23	36	1.93
1253493--1253956	139	3.3	136	78	7	461	26	16	26	30	1.96
1254170--1254349	68	2.7	67	88	3	263	37	12	17	31	1.88
1254307--1254420	37	3.1	37	72	9	99	37	14	17	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1259537--1259601	8	8.1	8	71	5	51	78	1	3	16	0.96
1260133--1260164	15	2.2	14	94	5	55	75	0	0	25	0.81
1260328--1260429	32	3.2	32	80	4	98	50	4	15	28	1.64
1260370--1260461	32	3.0	32	78	10	102	50	3	16	30	1.61
1261250--1261408	65	2.5	64	86	4	205	29	17	22	30	1.96
1264132--1264210	23	3.5	22	74	8	79	22	22	27	26	1.99
1264132--1264194	21	2.9	22	76	4	65	22	23	25	28	1.99
1269919--1270077	65	2.4	67	80	9	186	29	16	22	32	1.95
1276475--1276536	23	2.7	23	85	2	81	22	30	24	22	1.99
1280140--1280239	3	33.0	3	87	2	146	65	2	1	32	1.11
1286329--1286361	16	2.0	17	88	5	50	33	27	9	30	1.88
1289503--1290072	144	3.9	143	78	11	502	41	10	14	33	1.80
1289512--1290083	74	7.8	73	80	6	574	40	11	14	33	1.81
1289742--1290072	68	4.7	69	81	8	230	41	11	14	33	1.81
1289843--1290072	70	3.2	70	87	7	302	39	12	14	33	1.83
1290163--1290401	111	2.1	112	94	0	417	44	13	14	27	1.82
1299238--1299301	23	2.9	23	74	4	69	23	23	21	31	1.99
1305100--1305258	65	2.4	67	80	9	186	29	16	22	32	1.95
1311648--1311709	23	2.7	23	85	2	81	22	30	24	22	1.99
1315322--1315421	3	33.0	3	87	2	146	65	2	1	32	1.11
1320809--1320861	18	2.8	18	80	8	61	66	0	9	24	1.21

Tables:   1   2   3   4   5   6

The End!