genome.fa.s1582.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001582.1 Hibiscus syriacus cultivar Beakdansim tig00003151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1162828

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 636 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632595--632667	20	3.7	20	92	0	119	17	24	24	32	1.97
633953--633999	19	2.5	19	79	6	51	53	6	10	29	1.60
635438--635486	20	2.5	20	86	0	62	18	26	22	32	1.97
646890--646923	4	8.5	4	93	0	59	76	0	20	2	0.92
650628--650669	13	3.2	13	79	0	57	30	19	16	33	1.94
650641--650806	85	2.0	84	89	1	251	30	18	18	31	1.95
654505--654560	6	9.3	6	73	7	51	19	37	0	42	1.52
654505--654560	18	3.1	18	82	5	60	19	37	0	42	1.52
655182--655235	4	13.5	4	84	7	74	72	0	24	3	1.01
657436--657642	113	1.8	113	88	2	317	24	15	15	43	1.86
657436--657771	113	3.0	112	78	10	294	25	16	15	43	1.86
657751--657825	16	4.7	16	81	0	78	28	25	6	40	1.81
660340--660379	21	2.0	20	85	5	53	15	22	15	47	1.82
662942--662972	16	2.0	15	93	6	53	48	12	0	38	1.42
662892--662947	2	28.0	2	100	0	112	50	0	0	50	1.00
664590--664617	3	9.3	3	100	0	56	64	0	0	35	0.94
666877--666916	20	2.0	20	100	0	80	35	20	25	20	1.96
673196--673278	38	2.2	38	95	0	148	43	15	19	21	1.88
677985--678021	9	4.2	9	89	6	58	67	0	32	0	0.91
681277--681307	15	2.1	15	100	0	62	19	19	19	41	1.90
687060--687378	163	2.0	163	96	0	584	28	22	15	33	1.95
692661--692715	9	5.7	10	77	12	53	21	20	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692671--692715	19	2.3	19	88	3	63	17	20	28	33	1.95
692686--692722	19	1.9	19	88	0	56	21	24	24	29	1.99
692745--692813	17	3.8	17	78	17	75	21	46	20	11	1.82
692721--692828	22	5.0	22	80	13	118	21	44	19	14	1.86
692767--692821	17	3.2	17	92	0	92	20	43	21	14	1.87
693254--693602	42	8.3	42	87	3	506	20	24	23	32	1.98
693253--693602	84	4.2	84	93	0	594	20	24	23	32	1.98
695412--695436	12	2.1	12	100	0	50	16	44	16	24	1.86
699731--699768	10	3.9	10	82	6	51	21	23	26	28	1.99
699724--699767	19	2.2	21	88	8	65	25	25	22	27	2.00
699766--699841	5	14.0	5	74	15	53	18	48	22	10	1.78
699768--699841	22	3.6	22	78	17	95	18	47	22	10	1.80
699789--699837	17	2.9	17	100	0	98	18	48	22	10	1.77
700759--701260	42	12.0	42	92	3	809	18	24	25	31	1.97
700759--701260	84	6.0	84	97	0	927	18	24	25	31	1.97
704398--704486	29	3.1	29	91	3	144	29	43	0	26	1.55
719893--719927	16	2.1	17	89	5	54	2	11	0	85	0.69
719896--719930	11	3.2	11	87	0	52	2	8	0	88	0.61
726738--727517	44	17.7	44	69	5	390	28	21	21	29	1.98
726750--727598	133	6.4	133	94	0	1418	28	21	21	29	1.98
726726--727648	177	5.2	176	69	7	405	28	21	21	29	1.98
726827--727472	89	7.3	89	65	11	250	28	21	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727547--727648	50	2.0	50	96	0	186	28	16	27	27	1.97
727825--727913	29	3.1	29	90	3	135	29	44	0	25	1.54
729203--730051	133	6.4	133	92	1	1402	28	21	21	28	1.98
729190--729969	44	17.7	44	70	4	433	28	21	21	28	1.99
730000--730101	50	2.0	50	92	0	168	27	15	27	29	1.96
730277--730365	29	3.1	29	90	3	135	29	44	0	25	1.54
734510--734534	13	1.9	13	100	0	50	40	16	16	28	1.89
735121--735166	4	11.5	4	100	0	92	76	0	23	0	0.79
739697--739918	37	6.1	37	76	8	186	31	17	10	40	1.83
739826--739889	34	1.9	32	90	6	101	26	20	12	40	1.88
739829--739916	34	2.5	33	82	10	97	28	20	11	39	1.87
740238--740459	37	6.4	37	71	16	188	27	18	14	40	1.89
740303--740555	30	7.8	30	66	20	125	29	17	15	37	1.90
740274--740724	132	3.4	133	88	3	626	27	19	14	38	1.90
740537--740576	21	1.9	21	89	0	62	22	17	15	45	1.85
740274--740724	67	6.8	67	88	2	617	27	19	14	38	1.90
741414--741482	23	3.0	22	80	4	75	26	26	24	23	2.00
741504--741715	103	2.1	103	99	0	415	36	25	12	25	1.91
742173--742213	20	2.0	20	90	0	64	9	34	31	24	1.88
742238--742280	21	2.0	21	90	0	68	16	23	27	32	1.96
743285--743566	137	2.1	134	80	3	314	26	29	16	28	1.97
743789--743838	3	17.3	3	79	8	50	34	0	6	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746962--746991	15	2.0	15	93	0	51	36	33	26	3	1.73
748494--748519	4	6.5	4	100	0	52	76	0	23	0	0.78
748335--748664	171	2.0	167	84	4	439	42	17	19	20	1.89
749330--749477	60	2.5	60	88	4	235	35	14	12	36	1.85
765949--765989	21	2.0	21	90	0	64	26	39	24	9	1.86
774774--774831	22	2.6	22	81	13	66	48	10	8	32	1.68
776078--776113	18	1.9	19	88	5	56	27	8	0	63	1.23
776080--776121	18	2.3	19	83	4	50	30	7	0	61	1.22
777721--777789	27	2.6	27	88	0	111	30	21	20	27	1.98
778806--778851	24	2.0	24	91	4	76	21	13	26	39	1.90
784893--784928	16	2.2	16	100	0	72	50	13	5	30	1.65
791063--791236	89	2.0	88	94	2	303	36	11	6	45	1.66
796841--797645	133	6.1	132	79	6	669	32	15	20	32	1.93
796841--797673	132	6.3	131	78	8	615	32	15	20	32	1.93
796839--797571	265	2.8	265	77	7	684	32	15	20	32	1.93
797945--798623	233	2.9	231	83	1	766	34	16	16	32	1.92
798428--798809	186	2.1	186	93	1	649	32	18	19	29	1.96
798193--799039	418	2.0	417	85	2	1130	34	17	17	30	1.93
798612--800777	232	9.3	233	84	4	2556	34	17	15	31	1.92
797960--799271	650	2.0	652	83	3	1669	35	17	16	31	1.92
798612--800777	465	4.7	465	83	4	2616	34	17	15	31	1.92
801348--801539	98	2.0	98	100	0	384	17	20	32	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
801348--801536	30	6.0	30	90	9	306	16	20	33	29	1.95
808582--808650	3	23.3	3	94	2	122	66	0	1	31	1.00
811567--811634	31	2.2	32	81	7	77	39	13	2	44	1.59
820204--820281	31	2.5	31	87	2	102	19	15	29	35	1.92
822678--822730	2	26.5	2	100	0	106	50	0	0	49	1.00
822892--822991	24	4.2	24	74	5	94	47	17	13	23	1.82
822886--822993	48	2.3	48	77	1	119	48	16	12	22	1.80
825475--825506	7	4.4	7	92	7	55	25	28	34	12	1.92
825476--825522	8	6.5	8	79	20	59	21	25	38	14	1.92
825476--825522	15	3.3	15	91	5	71	21	25	38	14	1.92
825483--825571	13	6.3	13	79	14	88	17	21	44	15	1.86
825517--825575	18	3.6	18	73	21	74	13	18	50	16	1.77
825504--825575	31	2.3	31	100	0	144	13	19	50	16	1.79
827544--827586	19	2.2	20	84	12	54	62	2	0	34	1.08
827550--827586	18	1.9	18	89	10	56	64	2	0	32	1.07
831009--831035	9	3.0	9	100	0	54	44	11	0	44	1.39
836419--836506	24	3.7	24	84	0	113	20	13	15	50	1.78
836442--836511	12	5.8	12	72	12	54	17	14	17	51	1.77
836422--836513	48	1.9	48	90	0	148	19	14	15	51	1.77
837646--837795	79	1.9	79	83	0	192	38	18	16	28	1.91
837729--838246	203	2.6	203	86	4	697	34	18	19	27	1.95
840250--840326	29	2.7	29	93	0	127	14	32	27	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840387--840426	14	2.9	14	100	0	80	7	32	37	22	1.82
843563--843627	3	21.7	3	100	0	130	67	0	0	32	0.91
851204--851243	14	2.8	14	96	3	71	30	15	15	40	1.87
854561--854597	15	2.5	15	100	0	74	27	5	51	16	1.66
858267--858321	3	18.7	3	85	10	78	32	1	0	65	1.03
858267--858321	19	2.9	19	84	12	78	32	1	0	65	1.03
864775--864896	22	5.3	24	67	22	75	69	0	24	5	1.10
864775--864938	44	3.7	44	74	8	147	70	1	23	4	1.12
864884--864938	20	2.8	20	100	0	110	76	3	20	0	0.94
864878--864948	6	11.2	6	81	11	79	74	2	21	1	1.02

Tables:   1   2   3   4   5   6