Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001582.1 Hibiscus syriacus cultivar Beakdansim tig00003151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1162828

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 636 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1069152--1069231
42
1.9
42
86
0
115
22
22
23
31
1.99
1079126--1079162
19
2.0
20
89
10
60
51
0
2
45
1.15
1079706--1079805
24
4.2
24
81
0
110
17
11
17
55
1.69
1079706--1079805
48
2.1
48
84
0
128
17
11
17
55
1.69
1079970--1080008
10
3.9
10
82
0
51
15
15
10
58
1.62
1080090--1080325
110
2.1
110
97
0
445
35
17
15
31
1.91
1082089--1082122
16
2.1
16
88
0
50
47
2
5
44
1.42
1082795--1083015
29
7.6
29
83
4
259
52
10
2
34
1.48
1091795--1091844
2
25.0
2
100
0
100
50
0
0
50
1.00
1106209--1106536
164
2.0
165
97
0
622
19
30
7
43
1.77
1106442--1106479
16
2.3
17
86
4
51
7
34
0
57
1.28
1107166--1107202
16
2.3
16
95
0
65
29
18
21
29
1.97
1110146--1110172
2
13.5
2
100
0
54
51
0
0
48
1.00
1110259--1110310
13
4.0
13
87
0
59
32
15
25
26
1.95
1110259--1110310
26
2.0
26
84
0
68
32
15
25
26
1.95
1119157--1119233
22
3.5
22
70
19
54
22
37
22
18
1.94
1119173--1119231
21
2.8
21
84
7
66
23
33
25
16
1.96
1126873--1126997
53
2.4
53
93
1
207
25
17
26
30
1.97
1129933--1129970
13
3.0
13
96
3
69
15
13
0
71
1.16
1130782--1130986
103
2.0
101
85
3
277
25
17
25
30
1.97
1132097--1132742
323
2.0
323
98
0
1238
26
13
22
38
1.90
1135715--1135739
5
5.0
5
100
0
50
60
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1136155--1136195
18
2.2
19
91
4
66
36
4
0
58
1.20
1139428--1139817
112
3.5
112
86
6
546
30
14
13
41
1.84
1139953--1140192
72
3.3
73
87
3
351
32
12
14
40
1.84
1140311--1141104
158
5.0
158
93
0
1284
32
13
12
41
1.82
1140604--1140651
23
2.1
23
84
0
60
35
14
10
39
1.80
1140614--1140663
23
2.2
23
85
0
64
34
12
12
42
1.79
1140772--1140821
23
2.2
23
92
0
82
32
18
12
38
1.87
1140920--1140970
23
2.2
23
85
0
66
29
21
9
39
1.85
1140930--1140980
23
2.2
23
89
0
75
29
17
11
41
1.85
1140980--1141232
128
2.0
128
92
1
418
30
14
13
41
1.85
1141205--1141255
23
2.2
23
92
0
84
33
21
7
37
1.82
1150816--1150851
18
2.0
18
94
0
63
47
11
16
25
1.79
1152082--1152121
21
1.9
21
94
0
71
30
17
15
37
1.90
1152079--1152154
21
3.6
20
74
13
64
25
17
21
36
1.94

Tables:   1   2   3   4   5   6

The End!