genome.fa.s1709.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001709.1 Hibiscus syriacus cultivar Beakdansim tig00003435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1326839

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 866 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677125--677174	24	2.1	24	88	0	73	38	22	18	22	1.94
678014--678080	20	3.3	20	95	0	116	22	19	26	31	1.98
678067--678216	20	7.5	20	93	0	246	20	18	19	42	1.90
681549--681617	10	7.1	10	69	18	56	8	10	20	60	1.54
681683--681715	16	2.1	16	94	0	57	6	12	21	60	1.53
687186--687265	42	1.9	42	85	10	110	22	21	21	35	1.96
686805--687757	256	3.7	254	85	5	1213	33	15	16	35	1.90
687883--687920	3	12.7	3	83	10	51	34	0	0	65	0.93
687887--687919	11	3.1	11	91	4	50	36	0	0	63	0.95
687883--687941	13	4.8	12	73	22	52	33	0	0	66	0.92
689020--690297	258	5.0	256	80	6	1299	32	15	17	35	1.91
689455--689541	42	2.1	42	84	2	113	27	19	21	31	1.98
689905--689959	20	2.8	20	91	0	83	23	23	18	34	1.96
689435--690164	237	3.0	237	82	5	753	32	15	17	34	1.91
689175--690164	494	2.0	496	82	3	1197	31	15	17	35	1.91
690211--690290	41	1.9	42	84	2	108	27	15	20	37	1.92
690368--690415	20	2.3	20	85	7	60	75	0	18	6	1.01
694485--694522	19	2.1	19	85	9	53	39	7	21	31	1.82
695800--695898	24	4.2	24	81	2	110	28	17	18	36	1.93
700198--700296	24	4.2	24	80	7	112	26	17	18	38	1.92
700201--700291	47	1.9	48	86	6	132	25	17	17	39	1.91
704717--704814	23	4.2	23	83	6	76	28	18	19	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
704720--704805	23	3.7	23	86	6	93	27	18	18	34	1.95
704730--704805	23	3.3	23	87	7	100	28	18	19	32	1.96
707798--708037	118	2.0	119	85	2	322	32	26	7	34	1.84
708727--709066	43	7.9	43	73	7	217	25	16	25	32	1.96
709431--709515	21	4.0	21	86	3	73	4	30	20	44	1.71
709446--709569	42	3.0	42	82	4	126	1	36	19	42	1.61
709479--709569	21	4.3	21	82	0	101	1	39	19	39	1.59
717772--717881	41	2.7	41	85	2	150	37	20	15	26	1.93
717890--717998	41	2.6	41	80	12	116	31	22	16	30	1.96
721055--721137	37	2.3	35	85	8	105	33	4	18	43	1.71
725625--725743	35	3.3	35	88	5	159	32	5	17	44	1.71
730223--730343	35	3.4	35	86	6	120	32	8	18	41	1.80
730250--730310	21	3.2	21	61	29	55	31	6	21	40	1.78
730242--730360	35	3.3	36	89	5	170	31	5	19	42	1.75
737201--737246	20	2.3	20	92	0	74	50	6	10	32	1.63
740286--740319	2	17.0	2	100	0	68	50	0	0	50	1.00
740861--740917	11	5.5	10	78	12	53	49	1	0	49	1.11
740932--741040	56	2.0	56	90	5	177	51	7	5	35	1.53
743328--743371	2	22.0	2	100	0	88	50	0	0	50	1.00
755712--755741	4	7.5	4	100	0	60	26	23	23	26	2.00
755739--755802	4	16.0	4	100	0	128	25	0	25	50	1.50
757664--757736	6	12.0	6	95	1	110	4	0	30	65	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757984--758098	37	3.1	37	91	2	185	20	16	6	57	1.60
757990--758100	38	3.0	37	88	7	161	19	16	5	58	1.57
760880--760961	38	2.2	38	90	0	128	46	14	23	15	1.83
761957--762016	3	19.7	3	96	3	111	31	0	1	66	1.01
766912--766979	35	1.9	35	87	0	100	23	23	19	33	1.97
777369--777403	15	2.3	15	95	0	61	17	2	0	80	0.84
782515--782567	26	2.1	25	82	10	63	26	24	28	20	1.99
784505--784552	23	2.1	23	85	11	64	33	2	0	64	1.05
786623--786683	31	2.0	30	84	6	79	22	18	19	39	1.92
790803--790833	2	15.5	2	100	0	62	51	0	48	0	1.00
791181--791300	63	1.9	63	87	1	177	19	18	25	36	1.94
791406--791448	6	7.5	6	97	2	72	30	53	16	0	1.43
791943--791973	6	5.2	6	100	0	62	0	16	48	35	1.46
792066--792164	41	2.4	41	84	5	119	41	24	19	15	1.89
792091--792170	41	2.0	41	92	0	133	40	23	17	18	1.91
792094--792166	20	3.6	20	71	10	67	42	24	19	13	1.87
792789--792814	13	2.0	13	100	0	52	46	7	15	30	1.74
792918--792957	2	20.0	2	100	0	80	50	0	0	50	1.00
794109--794164	20	2.7	21	83	2	60	30	21	21	26	1.98
794169--794206	19	2.0	19	94	0	67	31	5	28	34	1.80
794723--794841	41	2.9	41	88	0	175	21	17	22	37	1.94
794905--794950	19	2.4	19	85	3	56	21	17	30	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794916--794952	19	1.9	19	94	0	65	21	16	29	32	1.95
796804--796837	18	1.9	17	88	5	50	64	2	0	32	1.08
799342--799402	29	2.1	30	81	9	72	32	21	4	40	1.74
803029--803081	21	2.5	21	96	0	97	28	33	9	28	1.88
804238--804273	18	2.1	17	89	5	54	63	2	0	33	1.08
806778--806838	29	2.1	30	81	9	72	32	21	4	40	1.74
823179--823232	22	2.4	21	73	11	54	50	0	5	44	1.25
824179--824213	3	11.7	3	100	0	70	31	0	0	68	0.90
825785--825842	9	6.7	9	75	16	52	75	0	3	20	0.94
825780--825906	22	5.6	22	66	16	64	68	2	3	25	1.19
825862--825886	2	12.5	2	100	0	50	52	0	0	48	1.00
826158--826190	2	16.5	2	100	0	66	51	0	0	48	1.00
826280--826312	2	17.5	2	87	12	52	51	0	0	48	1.00
826238--826319	10	7.6	11	70	16	57	60	0	2	36	1.10
826413--826459	11	4.2	11	86	5	58	68	4	6	21	1.30
826403--826462	23	2.7	23	78	2	68	70	3	5	21	1.22
826468--826516	23	2.2	23	89	10	75	67	2	0	30	1.02
826405--826582	9	18.7	9	66	21	55	67	1	6	24	1.22
826470--826582	15	7.5	14	65	24	52	67	0	5	26	1.18
827953--829003	106	10.0	106	88	2	1435	22	18	24	34	1.96
827950--829008	318	3.3	316	90	2	1596	22	18	24	33	1.96
829923--829975	22	2.4	22	100	0	106	24	11	28	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830583--830661	20	4.2	19	73	16	56	1	13	6	78	1.00
830583--830632	20	2.5	20	83	6	57	2	12	6	80	0.98
830603--830663	16	3.8	16	75	18	54	0	14	4	80	0.87
834396--834465	25	2.9	24	80	14	65	72	2	7	17	1.19
834417--834491	22	3.4	21	77	15	64	76	5	2	16	1.09
834785--834821	2	18.5	2	100	0	74	51	0	0	48	1.00
835015--835067	2	26.5	2	100	0	106	50	0	0	49	1.00
835079--835125	11	4.2	11	86	5	58	68	4	6	21	1.30
835134--835185	23	2.1	26	89	10	83	69	1	0	28	0.99
835199--835243	12	3.7	12	81	3	54	66	0	4	28	1.11
835822--835918	37	2.6	37	81	0	122	31	9	15	43	1.78
852638--852669	15	2.1	15	94	0	55	21	37	0	40	1.54
854957--855001	21	2.2	20	84	7	56	15	31	33	20	1.93
858855--858894	21	1.9	21	85	10	55	35	10	2	52	1.48
866790--866871	29	2.8	29	92	1	128	32	14	10	41	1.81
875549--875589	3	14.0	3	85	14	59	31	0	0	68	0.90
875553--875589	19	2.0	18	94	5	65	32	0	0	67	0.91
875558--875600	19	2.3	19	84	8	52	37	2	0	60	1.10
875554--875600	22	2.1	22	84	7	60	36	2	0	61	1.08
882128--882199	26	3.0	25	75	18	82	26	23	11	38	1.88
882128--882216	46	2.0	45	90	2	142	25	25	10	38	1.87
882832--882877	19	2.3	20	85	14	60	69	13	17	0	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
882810--882920	56	2.0	57	87	8	165	70	11	15	2	1.28
884089--884169	4	20.8	4	79	5	94	49	23	1	25	1.58
884633--884773	71	2.0	72	88	1	212	31	17	13	38	1.88
884633--884767	36	3.8	36	84	6	175	32	17	14	36	1.89
884740--884978	105	2.3	101	80	7	259	30	19	12	36	1.89
884925--885008	36	2.4	36	84	6	109	30	21	11	35	1.90
884940--885044	36	3.0	36	80	5	117	32	20	11	36	1.88
885296--885366	28	2.6	27	79	14	83	28	9	16	45	1.80
885299--885381	26	3.1	25	80	11	76	28	9	14	46	1.76
885467--885524	28	2.1	27	90	3	89	32	5	17	44	1.70

Tables:   1   2   3   4   5   6   7   8