genome.fa.s1709.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001709.1 Hibiscus syriacus cultivar Beakdansim tig00003435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1326839

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 866 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1245274--1245307	17	2.0	17	94	0	59	2	41	32	23	1.69
1246618--1246734	39	3.0	39	88	1	162	19	21	39	19	1.93
1246505--1246847	173	2.0	174	85	1	465	22	18	33	25	1.97
1246885--1246981	28	3.4	28	76	15	90	43	15	16	24	1.87
1246957--1247106	63	2.3	66	79	10	164	38	13	22	26	1.90
1247101--1247170	32	2.2	33	89	2	106	37	11	14	37	1.82
1247635--1247757	65	1.9	64	86	1	174	45	13	12	29	1.79
1249635--1249682	19	2.5	18	86	10	60	0	14	10	75	1.06
1249660--1249686	13	2.1	13	100	0	54	0	14	7	77	0.97
1250984--1251014	13	2.3	14	94	5	55	61	9	6	22	1.50
1253225--1253348	60	2.1	60	84	3	160	47	2	16	33	1.59
1254923--1254995	36	2.0	36	84	10	96	47	4	1	46	1.30
1256070--1256184	61	1.9	61	82	7	146	30	20	6	42	1.78
1257363--1257503	74	1.9	73	89	1	219	41	8	7	43	1.62
1258343--1258425	43	1.9	43	82	4	105	10	12	15	61	1.57
1292343--1292367	3	8.3	3	100	0	50	32	0	0	68	0.90
1300740--1300774	16	2.2	16	89	0	52	34	5	5	54	1.48
1306187--1306240	25	2.1	26	83	10	67	64	7	3	24	1.35
1311308--1311759	51	8.6	56	89	3	314	28	25	15	29	1.96
1311415--1311769	51	6.9	51	93	1	557	27	27	15	29	1.96
1311308--1311773	102	4.4	102	85	5	567	29	25	15	29	1.96
1313093--1313201	25	4.2	25	72	13	78	4	22	1	70	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1313110--1313195	44	1.9	46	83	4	113	4	23	2	69	1.18
1313139--1313186	20	2.3	20	75	10	53	6	16	4	72	1.20
1313163--1313211	19	2.7	18	87	9	64	4	18	2	75	1.06
1322852--1322949	44	2.1	46	90	7	155	39	20	10	29	1.85

Tables:   1   2   3   4   5   6   7   8

The End!