genome.fa.s1981.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001981.1 Hibiscus syriacus cultivar Beakdansim tig00004035_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1059896

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 528 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002907--1003019	37	3.1	37	97	0	208	32	12	14	40	1.83
1003098--1003124	2	13.5	2	100	0	54	51	0	0	48	1.00
1003294--1003347	17	3.0	18	78	13	58	57	5	5	31	1.45
1009015--1009054	22	1.9	20	85	10	53	42	10	15	32	1.79
1015661--1015700	20	2.0	20	90	0	62	20	35	25	20	1.96
1015661--1015721	22	2.9	20	83	9	70	21	34	26	18	1.96
1015704--1015742	21	1.9	21	89	5	62	25	38	25	10	1.87
1018500--1018542	20	2.2	20	100	0	86	23	23	34	18	1.96
1018508--1018554	20	2.3	20	88	0	67	23	31	23	21	1.98
1024093--1024145	21	2.5	21	81	6	72	20	26	18	33	1.96
1024132--1024187	20	2.8	20	94	2	94	42	14	19	23	1.88
1024240--1024302	20	3.2	20	86	0	90	30	28	12	28	1.93
1024496--1024539	22	2.0	22	95	0	79	20	45	15	18	1.85
1024788--1024846	20	3.0	20	87	0	73	15	18	22	44	1.87
1024983--1025037	25	2.2	24	78	15	58	20	9	18	52	1.71
1026165--1026212	18	2.7	18	93	0	87	27	45	12	14	1.81
1026786--1026868	19	4.6	19	78	14	104	46	20	19	13	1.82
1026880--1026971	14	5.9	14	72	22	76	10	17	22	48	1.78
1026875--1026987	33	3.4	33	98	0	217	11	18	22	47	1.80
1026960--1027066	20	5.4	20	85	1	126	16	20	25	37	1.93
1028846--1028884	14	2.8	14	84	0	51	35	0	17	46	1.49
1029011--1029064	14	3.5	14	77	22	63	48	20	20	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029096--1029183	20	4.4	20	77	5	97	17	22	22	37	1.94
1029168--1029197	14	2.1	14	93	0	51	10	30	23	36	1.87
1029471--1029519	20	2.4	21	79	3	55	20	20	16	42	1.89
1030307--1030360	24	2.2	24	90	0	81	22	16	20	40	1.91
1030535--1030559	12	2.1	12	100	0	50	72	0	28	0	0.86
1032885--1032982	19	5.7	19	66	22	72	45	17	23	13	1.83
1032885--1032976	33	2.8	33	91	0	148	46	17	22	13	1.82
1032977--1033054	19	4.4	19	73	18	69	12	15	23	48	1.79
1032994--1033119	33	3.8	33	91	2	182	13	19	20	46	1.83
1033028--1033119	19	5.4	19	71	24	96	15	20	18	45	1.85
1033226--1033262	14	2.6	14	91	0	65	45	24	0	29	1.53
1034609--1034675	21	3.2	21	65	4	55	19	19	35	25	1.95
1034968--1035120	78	1.9	79	89	5	236	43	18	12	25	1.85
1036805--1036988	33	5.4	33	90	4	251	45	20	22	11	1.83
1036805--1036988	14	10.6	19	68	23	129	45	20	22	11	1.83
1036993--1037077	19	4.7	19	71	20	74	10	18	23	47	1.80
1037610--1037704	21	4.6	21	89	2	122	21	21	17	40	1.92
1037610--1037704	41	2.3	42	85	3	122	21	21	17	40	1.92
1037701--1037756	20	2.7	21	80	5	69	42	16	21	19	1.89
1037700--1037766	21	3.2	21	78	4	73	38	16	22	22	1.92
1037776--1037827	20	2.5	21	81	3	61	21	21	17	40	1.91
1037817--1037869	21	2.5	22	81	6	74	33	18	26	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038074--1038115	22	2.0	20	90	9	66	26	7	14	52	1.67
1040896--1040927	7	4.6	7	92	0	55	3	0	43	53	1.16
1054601--1054920	43	7.4	45	85	8	450	23	20	17	38	1.93
1054607--1054920	171	1.8	171	89	6	501	23	20	16	38	1.92

Tables:   1   2   3   4   5

The End!