genome.fa.s2276.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002276.1 Hibiscus syriacus cultivar Beakdansim tig00004630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  831455

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 539 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283028--283164	68	2.0	68	97	0	256	37	17	6	37	1.76
283341--283376	18	1.9	19	88	5	56	33	5	0	61	1.19
285595--285644	20	2.5	20	80	3	57	34	14	10	42	1.78
287628--287720	21	4.6	20	81	4	105	38	17	24	19	1.92
287625--287720	41	2.3	41	96	0	174	39	16	23	19	1.92
287628--287720	20	4.6	20	81	4	105	38	17	24	19	1.92
287709--287802	20	4.7	20	78	2	80	34	23	18	24	1.96
287706--287783	41	1.9	41	86	0	111	39	21	16	21	1.92
288328--288392	19	3.4	19	80	2	67	44	24	18	12	1.84
288388--288591	19	11.1	19	79	13	194	13	22	21	43	1.86
288479--288566	33	2.6	33	89	1	131	12	25	23	38	1.90
288534--288591	20	2.9	20	80	10	64	13	24	18	43	1.87
292156--292190	18	1.9	18	88	0	52	28	17	0	54	1.43
293291--293353	8	8.4	8	88	11	98	22	25	38	14	1.92
293348--293393	18	2.6	18	96	0	83	13	15	52	19	1.75
293318--293383	26	2.5	26	76	20	66	19	19	45	15	1.85
293297--293371	13	5.3	13	91	4	87	20	22	42	14	1.88
294971--295093	42	2.9	42	80	2	122	22	36	17	22	1.95
295027--295093	21	3.2	21	66	6	55	23	35	20	19	1.95
296449--296485	14	2.6	14	91	0	65	29	0	24	45	1.53
296603--296644	20	2.1	20	100	0	84	52	19	19	9	1.72
296650--296767	19	6.7	19	66	19	76	13	23	20	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296654--296747	33	2.8	33	98	0	179	12	24	19	43	1.85
300419--300455	19	1.9	19	94	0	65	13	21	24	40	1.89
300539--300575	14	2.6	14	86	0	56	48	21	0	29	1.50
300922--300972	20	2.5	20	96	0	93	33	21	23	21	1.97
301138--301174	14	2.6	14	86	0	56	48	21	0	29	1.50
300163--302648	596	4.1	593	86	8	3481	36	19	12	31	1.88
301518--301568	20	2.5	20	96	0	93	33	21	23	21	1.97
301598--301670	14	4.5	15	74	22	60	13	20	19	46	1.83
301594--301660	18	3.8	19	83	16	92	13	22	17	46	1.83
301776--301812	14	2.6	14	86	0	56	48	21	0	29	1.50
302364--302400	14	2.6	14	86	0	56	48	21	0	29	1.50
304263--304328	20	3.5	19	83	6	89	36	24	24	15	1.93
304318--304373	14	3.8	14	78	21	69	46	26	17	8	1.78
304302--304378	31	2.4	32	95	2	138	45	24	19	10	1.81
304385--304448	19	3.6	19	72	20	75	14	20	20	45	1.85
304433--304487	20	2.8	19	83	8	65	16	23	23	36	1.94
304959--305003	18	2.5	18	85	0	63	15	15	42	26	1.87
306323--306360	20	1.9	20	88	0	58	50	21	15	13	1.78
306605--306648	22	2.0	22	86	0	61	20	18	43	18	1.89
306836--306929	20	4.7	20	80	2	89	23	19	24	32	1.97
306856--306933	41	1.9	41	86	0	111	21	17	21	38	1.93
306816--306930	20	5.7	20	78	5	88	23	18	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306919--307011	21	4.5	21	74	4	91	18	22	18	40	1.91
306919--307014	41	2.3	41	94	0	165	18	21	17	41	1.90
307816--307871	26	2.2	26	90	9	89	33	16	1	48	1.56
308228--308299	30	2.4	30	80	0	81	38	18	18	25	1.92
311570--311612	20	2.1	21	86	4	61	9	13	20	55	1.66
336019--336064	20	2.3	20	96	0	83	15	36	13	34	1.86
355847--355893	19	2.5	19	96	0	85	23	31	14	29	1.95
363380--363423	22	2.0	22	95	0	79	29	13	40	15	1.86
368529--368572	22	2.0	22	95	0	79	29	13	40	15	1.86
373081--373108	14	2.0	14	100	0	56	21	28	7	42	1.79
377041--377088	24	2.0	24	100	0	96	16	12	25	45	1.82
383551--383615	30	2.2	30	86	5	87	38	20	21	20	1.94
383806--383846	15	2.7	15	92	0	73	56	17	2	24	1.53
384892--384936	18	2.5	18	88	0	63	28	31	17	22	1.97
384906--384944	18	2.2	18	95	0	69	33	28	17	20	1.96
385202--385245	2	22.0	2	100	0	88	50	0	0	50	1.00
387237--387297	21	3.0	21	78	2	79	31	27	14	26	1.95
389431--389470	21	2.0	21	85	14	57	32	0	15	52	1.43
417553--417615	30	2.0	29	85	11	81	46	0	3	50	1.17
417553--417652	35	3.1	30	75	17	85	44	0	2	54	1.11
418202--418241	12	3.4	12	79	6	55	22	10	0	67	1.20
418392--418554	81	2.0	81	97	0	308	36	22	12	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423823--423902	29	2.8	29	98	0	151	31	15	17	36	1.91
426887--426949	22	2.8	23	87	2	92	38	20	4	36	1.74
426967--427011	22	2.0	22	86	0	63	40	11	8	40	1.72
427356--427414	18	2.8	22	73	19	63	37	23	5	33	1.77
426493--428296	460	3.9	468	91	6	2887	40	11	7	41	1.69
427816--427870	22	2.5	22	84	3	83	40	20	3	36	1.70
426493--428296	925	1.9	928	92	5	3033	40	11	7	41	1.69
428379--428433	22	2.6	21	91	8	85	67	0	5	27	1.12
428445--428620	37	5.0	36	76	8	132	43	5	4	46	1.47
428606--428634	14	2.0	15	93	6	51	51	6	0	41	1.28
428501--428747	123	2.0	119	88	8	365	43	6	4	44	1.51
428621--428813	35	5.3	36	77	12	166	44	7	4	44	1.51
428692--428842	35	4.2	35	75	12	112	45	8	2	43	1.48
429387--429979	165	3.6	166	83	3	707	24	20	26	29	1.99
429443--429979	248	2.2	246	84	3	675	23	21	26	28	1.99
429443--429955	83	6.2	84	83	5	641	23	21	26	29	1.99
435405--435436	13	2.5	13	100	0	64	0	46	12	40	1.42
436318--436359	20	2.1	20	86	0	57	73	0	7	19	1.05
436368--436416	26	1.9	25	83	4	62	51	6	2	40	1.38
436381--436499	36	3.3	36	80	8	134	44	4	4	47	1.42
436381--436551	34	4.8	35	78	8	134	42	5	4	47	1.46
436398--436556	36	4.6	33	72	16	108	42	5	4	47	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436438--436686	125	2.0	125	89	7	382	43	6	4	44	1.51
436559--436758	36	5.3	37	77	11	167	44	7	4	44	1.49
442951--443075	31	4.1	31	88	2	189	24	11	16	48	1.79
442956--443074	61	1.9	62	93	1	204	25	11	15	47	1.80
443672--443709	20	2.0	20	89	5	60	36	0	0	63	0.95
443802--443863	29	2.1	29	87	0	88	35	19	11	33	1.87
448101--448266	85	2.0	84	82	7	201	31	21	17	30	1.96
449762--449804	2	21.5	2	100	0	86	51	0	0	48	1.00
452530--452572	15	2.9	15	96	3	79	4	39	0	55	1.20
454004--454057	19	2.8	20	82	2	74	27	20	29	22	1.98
464450--464495	19	2.6	17	77	12	56	19	4	32	43	1.71
466352--466446	42	2.3	42	86	0	136	29	7	6	56	1.51
470710--470763	27	2.0	27	100	0	108	44	29	7	18	1.77
476376--476403	12	2.3	12	100	0	56	42	25	25	7	1.80
489658--489732	31	2.5	31	80	2	98	33	9	17	40	1.81
495542--495633	45	2.0	45	82	0	112	38	33	13	15	1.86
503153--503258	55	1.9	55	84	0	140	47	14	17	20	1.83
503919--504069	72	2.1	72	94	0	266	37	13	25	23	1.91
508683--508790	36	3.1	33	81	7	85	37	21	20	21	1.95
508695--508790	36	2.6	36	88	4	131	36	20	19	22	1.95
508703--508833	36	3.6	37	79	7	126	34	19	20	25	1.96
509193--509799	54	11.5	54	88	4	891	35	18	25	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509777--510196	55	7.8	55	84	7	458	29	15	25	30	1.96
509794--510224	110	4.0	110	83	9	516	28	15	24	31	1.96
521785--521884	51	2.0	51	82	4	121	54	5	7	34	1.49
522766--522805	2	20.0	2	85	10	55	50	2	0	47	1.14
525422--525448	8	3.4	8	100	0	54	77	0	0	22	0.76
529457--529561	37	2.8	37	86	0	147	40	15	14	29	1.86
529995--530030	2	19.0	2	88	11	58	52	0	0	47	1.00
529995--530030	11	3.2	12	84	15	58	52	0	0	47	1.00
530124--530231	22	4.9	23	72	21	88	28	4	0	65	1.18
530248--530288	11	3.6	11	87	6	55	24	4	4	65	1.32

Tables:   1   2   3   4   5