genome.fa.s2276.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002276.1 Hibiscus syriacus cultivar Beakdansim tig00004630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  831455

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 539 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737668--737776	48	2.3	48	85	3	139	18	16	17	47	1.83
747850--747920	33	2.2	32	87	5	99	29	32	9	28	1.89
753413--753492	24	3.3	24	91	0	124	31	15	15	38	1.88
753732--753779	20	2.4	20	85	0	60	12	25	22	39	1.89
755317--755359	20	2.2	20	83	8	52	74	4	6	13	1.19
757314--757374	20	3.0	20	85	0	77	18	18	29	34	1.94
758717--758751	2	17.5	2	93	0	61	0	45	2	51	1.16
759045--759413	20	18.5	20	85	4	458	34	26	18	20	1.96
760085--760131	24	2.0	24	87	8	69	25	14	21	38	1.92
762620--762921	19	17.4	19	77	18	320	46	18	20	14	1.83
762648--762921	52	5.2	52	89	6	323	46	17	20	14	1.83
762620--762921	70	4.4	70	80	13	337	46	18	20	14	1.83
762620--762943	84	3.8	89	83	11	341	46	18	20	14	1.84
762620--762945	140	2.4	136	89	6	473	46	18	20	14	1.84
762950--763049	19	5.5	19	82	12	138	16	23	16	45	1.85
763154--763189	14	2.6	14	86	4	56	47	22	0	30	1.52
765077--765141	18	3.4	19	83	10	80	44	27	16	10	1.81
765077--765174	19	5.4	19	72	15	82	44	25	18	11	1.82
765113--765203	33	2.8	33	94	1	166	46	21	20	10	1.82
765093--765209	19	6.8	19	72	20	87	45	23	20	11	1.83
765204--765296	33	2.8	33	90	3	152	8	19	25	46	1.78
765199--765333	19	7.6	19	72	20	105	9	18	26	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
765377--765844	92	5.1	93	97	2	892	45	19	12	22	1.83
767532--767621	14	5.7	14	74	23	81	42	23	25	8	1.83
767524--767638	33	3.5	33	95	0	212	45	20	24	9	1.81
767531--767643	19	6.8	18	72	23	88	43	22	24	9	1.83
767655--767709	14	3.6	14	73	21	56	9	27	23	40	1.85
767830--767900	33	2.2	33	92	0	115	47	18	22	11	1.80
768080--768134	22	2.5	22	81	0	74	20	16	40	23	1.91
768280--768473	20	9.6	20	82	5	221	19	19	25	35	1.95
768280--768473	60	3.2	60	83	0	253	19	19	25	35	1.95
768466--768542	21	3.7	20	70	13	57	27	16	23	32	1.96
768528--768579	20	2.6	20	96	0	95	21	13	26	38	1.90
769096--769142	2	24.0	2	83	12	62	46	2	2	48	1.25
769946--769976	3	10.3	3	92	0	53	0	29	0	70	0.87
770044--770149	3	34.3	3	78	9	106	4	33	1	59	1.29
770251--771080	3	280.3	3	89	7	1263	1	31	0	66	1.03
769946--770272	173	1.9	173	92	3	537	20	26	4	48	1.68
780210--780266	28	2.0	28	83	6	71	29	14	24	31	1.94
784428--784484	26	2.2	26	84	9	71	71	1	7	19	1.17
784521--784647	4	32.2	4	68	20	54	75	0	2	21	0.96
784529--784645	8	14.0	8	73	16	78	76	0	2	20	0.96
784521--784670	46	3.2	46	83	7	169	72	0	2	24	1.03
784506--784601	38	2.5	37	75	16	97	76	1	4	18	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784568--784662	34	2.8	36	65	21	60	70	1	2	26	1.05
784652--784680	2	14.5	2	100	0	58	51	0	0	48	1.00
784699--784757	26	2.3	26	85	5	75	67	3	1	27	1.16
790024--790082	15	3.9	15	95	0	109	28	25	25	20	1.99
792687--793002	162	2.0	159	96	3	589	30	22	8	38	1.84
792871--793131	129	2.0	131	96	3	483	29	22	6	40	1.79
793147--793185	15	2.6	15	91	0	60	23	10	7	58	1.56
797064--797097	15	2.3	15	94	0	59	32	32	20	14	1.93
797630--797779	64	2.3	64	80	10	182	29	17	18	35	1.93
806335--806510	81	2.2	81	79	10	182	39	15	14	29	1.88
819823--819874	6	8.7	6	97	0	95	13	50	1	34	1.53
822944--822987	6	7.3	6	100	0	88	0	15	50	34	1.45
824979--825014	12	2.8	13	88	12	56	47	2	0	50	1.15
827548--827581	10	3.4	10	87	0	50	20	5	0	73	1.04
829836--829876	21	2.0	21	90	9	68	21	7	4	65	1.37

Tables:   1   2   3   4   5

The End!