genome.fa.s2276.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002276.1 Hibiscus syriacus cultivar Beakdansim tig00004630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  831455

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 539 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577261--577320	2	30.5	2	93	3	104	46	0	0	53	1.00
577244--577318	19	4.0	19	89	5	73	44	2	0	53	1.14
578053--578147	37	2.5	38	83	6	122	42	14	12	30	1.83
578713--578814	24	4.3	24	70	17	88	27	5	0	65	1.22
578731--578873	73	1.9	76	80	9	170	22	7	2	67	1.26
578836--578876	11	3.6	11	87	6	55	24	4	4	65	1.32
578885--578909	2	12.5	2	100	0	50	48	0	0	52	1.00
579855--579951	37	2.6	37	83	0	131	40	15	12	31	1.84
580508--580617	30	3.6	29	71	18	89	28	5	0	65	1.21
580510--580623	24	5.2	23	70	20	75	27	5	0	66	1.18
580570--580621	25	2.0	28	88	11	83	28	0	1	69	0.99
580639--580678	11	3.6	11	86	0	53	25	5	5	65	1.34
580790--580826	11	3.5	11	82	10	51	24	5	0	70	1.08
580886--580972	2	43.5	2	97	0	165	49	0	1	49	1.08
581201--581295	25	4.0	22	75	17	57	26	3	4	66	1.25
581710--581806	37	2.6	37	83	3	133	41	15	12	30	1.84
582370--582428	19	3.2	18	79	18	52	28	6	0	64	1.19
582389--582458	31	2.3	31	82	9	90	25	4	1	68	1.16
582367--582458	47	1.9	48	83	14	120	27	4	1	67	1.16
582417--582467	19	2.7	20	80	17	56	27	0	1	70	0.98
583048--583121	30	2.5	30	75	16	73	17	4	2	75	1.07
583492--583588	37	2.6	37	88	0	149	40	16	13	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588781--588823	21	2.1	20	83	12	52	32	2	2	62	1.20
588808--588866	26	2.2	27	78	3	66	23	3	3	69	1.19
589383--589451	3	24.0	3	81	8	81	34	0	2	62	1.10
589379--589451	17	4.2	17	83	11	85	34	0	2	63	1.09
589379--589451	14	5.2	14	82	17	82	34	0	2	63	1.09
589379--589451	20	3.8	20	85	7	91	34	0	2	63	1.09
589654--589693	2	20.0	2	84	0	53	42	0	7	50	1.30
594897--595032	72	1.9	72	92	0	227	27	19	16	35	1.94
597997--598246	75	3.4	73	75	12	199	32	16	21	29	1.95
599522--599600	22	3.6	22	84	0	104	30	15	12	41	1.84
599953--600021	3	22.3	3	85	2	84	39	0	0	60	0.97
599944--600021	15	5.1	15	84	6	75	39	0	0	60	0.97
600449--600483	15	2.3	15	95	0	61	48	20	28	2	1.63
601272--601331	29	2.1	29	84	9	79	36	1	3	58	1.25
610201--610340	75	1.9	75	84	3	192	33	17	19	29	1.95
611622--611676	22	2.5	22	90	0	92	36	10	12	40	1.79
612343--612947	45	13.4	45	93	0	967	22	24	18	34	1.96
612343--612947	226	2.7	226	90	1	980	22	24	18	34	1.96
614676--614763	33	2.7	33	96	0	158	10	37	19	32	1.85
614961--615005	20	2.2	20	100	0	90	26	13	35	24	1.92
615686--615720	3	12.3	3	88	11	56	65	0	0	34	0.93
615978--616530	52	10.6	52	94	0	944	29	25	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616526--616803	55	5.1	55	88	2	429	28	28	14	28	1.95
616526--616803	108	2.6	110	90	3	447	28	28	14	28	1.95
618071--618179	1	109.0	1	70	0	56	7	8	0	83	0.85
618071--618179	11	10.0	11	70	13	73	7	8	0	83	0.85
618070--618179	14	7.8	14	77	13	68	7	9	0	82	0.88
618071--618179	33	3.4	32	80	14	95	7	8	0	83	0.85
618121--618179	15	3.8	15	82	12	75	10	6	0	83	0.82
618071--618179	8	13.4	8	74	18	73	7	8	0	83	0.85
619549--619575	14	1.9	14	100	0	54	29	29	25	14	1.95
625616--625701	32	2.7	33	89	5	131	11	36	18	33	1.87
625897--625941	19	2.3	20	96	3	83	24	15	35	24	1.94
626614--626652	3	13.7	3	89	10	64	66	0	0	33	0.92
626680--626879	45	4.4	45	87	0	283	23	19	19	38	1.94
626679--626879	90	2.2	90	91	0	330	23	19	18	37	1.94
627009--627063	3	18.3	3	77	7	58	40	0	0	60	0.97
627009--627063	24	2.4	24	85	8	71	40	0	0	60	0.97
629490--630176	45	14.8	46	90	3	895	26	21	19	31	1.98
629490--630176	48	14.7	47	90	3	907	26	21	19	31	1.98
629490--630176	143	4.9	139	87	4	926	26	21	19	31	1.98
630381--630434	6	9.0	6	85	0	63	44	0	0	55	0.99
631640--631679	14	2.8	15	85	11	57	35	5	0	60	1.19
632216--632266	17	2.9	17	86	13	77	27	1	0	70	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632209--632256	12	3.5	14	83	13	55	27	0	0	72	0.84
632962--632986	12	2.1	12	100	0	50	32	16	20	32	1.94
642310--642376	33	2.0	33	100	0	134	25	17	26	29	1.98
642436--642474	20	2.0	20	89	0	60	20	5	17	56	1.60
649704--650084	182	2.1	182	87	1	532	40	13	15	30	1.85
652557--653024	247	1.9	247	86	3	661	37	14	16	30	1.89
652774--653356	200	2.9	200	90	1	866	37	14	15	32	1.88
656538--656583	21	2.2	20	92	3	74	43	6	10	39	1.66
656545--656591	21	2.2	21	88	0	67	38	10	10	40	1.75
657084--657246	87	1.9	87	93	0	281	33	14	11	41	1.81
663587--663672	23	3.7	23	72	14	86	19	25	25	29	1.99
667478--667548	31	2.2	30	80	14	72	39	0	2	57	1.13
668441--668595	78	2.0	78	97	0	292	27	10	18	42	1.84
675272--675715	219	2.0	218	95	0	798	33	20	16	29	1.94
677018--677621	298	2.0	304	97	2	1141	34	7	15	42	1.76
679428--679482	27	2.0	27	86	6	76	41	7	16	34	1.76
680817--680892	29	2.6	29	80	4	80	42	7	2	47	1.46
688050--688087	18	2.1	18	90	0	58	34	26	15	23	1.95
690064--690128	23	2.8	23	85	0	94	26	24	27	21	1.99
690143--690360	103	2.1	103	96	0	400	36	23	13	26	1.92
695673--695755	23	3.4	23	68	26	71	20	25	7	46	1.76
695655--695757	51	2.0	51	100	0	206	21	23	7	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696097--696183	23	3.8	23	90	0	129	26	26	29	17	1.97
696199--696416	103	2.1	103	94	0	391	36	23	13	26	1.92
698411--698496	30	2.9	29	82	1	100	38	9	0	52	1.34
698546--698606	28	2.2	27	85	5	86	36	1	1	60	1.16
698596--698655	28	2.1	29	90	3	95	53	1	3	41	1.27
702413--702488	30	2.6	29	89	2	107	42	9	0	48	1.35
702574--702633	28	2.1	29	90	3	95	53	1	3	41	1.27
713423--713470	24	2.1	24	92	7	82	29	4	4	62	1.32
716971--717013	23	1.9	23	85	4	61	58	2	2	37	1.24
725667--725750	13	6.3	13	87	2	114	17	42	21	17	1.89
725698--725777	8	10.5	8	75	24	59	17	38	22	21	1.93
725727--725757	7	4.3	7	92	8	53	12	35	25	25	1.92
725724--725758	15	2.3	15	100	0	70	14	37	25	22	1.92
725724--725778	7	6.6	9	84	16	50	18	34	23	23	1.96
727052--727087	18	2.0	18	88	0	54	52	0	16	30	1.44
728226--728320	24	4.0	24	84	0	118	18	14	17	48	1.81
728249--728318	12	5.8	12	81	6	79	14	15	18	51	1.77
728212--728320	48	2.3	48	85	3	139	18	16	17	47	1.83
730395--730478	13	6.3	13	87	2	114	17	42	21	17	1.89
730426--730505	8	10.5	8	75	24	59	17	38	22	21	1.93
730455--730485	7	4.3	7	92	8	53	12	35	25	25	1.92
730452--730486	15	2.3	15	100	0	70	14	37	25	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730452--730506	7	6.6	9	84	16	50	18	34	23	23	1.96
731780--731815	18	2.0	18	88	0	54	52	0	16	30	1.44
732955--733048	24	4.0	24	84	1	118	19	14	18	47	1.82
732978--733046	12	5.8	12	81	8	79	14	15	18	50	1.78
732941--733044	48	2.2	48	84	5	131	18	17	17	47	1.84
735122--735190	13	5.3	13	89	0	111	18	44	20	15	1.86
735182--735211	7	4.3	7	100	0	60	13	33	26	26	1.93
736506--736541	18	2.0	18	88	0	54	52	0	16	30	1.44
737682--737776	24	4.0	24	84	0	118	18	14	17	48	1.81
737705--737774	12	5.8	12	81	6	79	14	15	18	51	1.77

Tables:   1   2   3   4   5