genome.fa.s251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000251.1 Hibiscus syriacus cultivar Beakdansim tig00000453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  648719

Tables:   1   2   3   4   

This is table  1  of  4  ( 464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2048--2142	2	48.0	2	89	2	147	47	3	1	48	1.24
3199--3235	3	12.7	3	83	16	51	67	2	0	29	1.04
3439--3866	140	3.2	129	77	11	425	25	17	28	27	1.98
18175--18204	10	3.0	10	95	0	51	56	0	3	40	1.16
18169--18206	13	2.9	14	84	7	53	60	0	2	36	1.11
19771--20084	156	2.0	156	98	0	601	18	11	18	51	1.75
22811--22858	15	3.1	16	82	8	55	60	0	0	39	0.97
22811--22861	17	3.1	17	75	13	54	60	0	0	39	0.97
23003--23039	14	2.6	14	91	0	56	51	8	5	35	1.55
24395--24426	2	16.0	2	100	0	64	50	0	0	50	1.00
32281--32805	262	2.0	263	98	0	1016	37	12	21	28	1.90
41985--42045	28	2.2	28	81	0	68	26	18	22	32	1.97
44483--44536	17	3.2	17	72	0	54	31	0	3	64	1.11
46065--46112	21	2.3	21	85	0	60	25	39	12	22	1.89
46116--46188	21	3.5	21	88	7	112	17	34	27	20	1.95
46710--46807	34	2.9	34	87	0	133	57	4	2	36	1.30
48210--48699	128	3.8	128	93	0	822	32	21	23	22	1.98
48780--48820	8	5.2	8	82	5	57	36	29	0	34	1.58
53463--53495	17	2.0	17	94	5	59	15	0	36	48	1.45
54081--54114	17	1.9	18	94	5	61	47	14	5	32	1.69
54082--54119	17	2.2	17	86	9	51	50	13	2	34	1.55
54336--54396	27	2.3	26	81	13	70	39	3	0	57	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54445--54500	29	1.9	29	82	7	69	42	1	1	53	1.21
54899--54931	14	2.4	14	85	5	50	54	0	0	45	0.99
58924--58982	14	4.2	14	77	0	64	30	23	18	27	1.98
61623--61802	90	2.0	90	100	0	360	33	26	10	30	1.89
63533--63595	23	2.6	24	78	19	60	50	1	0	47	1.10
63567--63613	22	2.1	23	88	4	69	44	2	0	53	1.12
63672--63773	27	3.8	26	74	14	82	48	1	0	49	1.19
63872--63942	33	2.2	33	82	10	83	50	5	0	43	1.25
64533--64597	29	2.2	29	86	2	85	49	13	3	33	1.58
64546--64608	29	2.2	29	88	0	90	47	11	6	34	1.64
64625--64805	54	3.4	54	89	0	272	30	21	19	27	1.98
65223--65274	20	2.6	20	87	6	70	19	28	17	34	1.94
69542--69645	44	2.3	45	81	8	122	26	21	7	44	1.79
71176--71228	18	3.0	18	91	2	81	35	33	15	15	1.88
71192--71291	44	2.3	44	91	0	164	35	32	15	18	1.91
73362--73431	34	2.1	32	86	5	95	20	31	15	32	1.94
76439--76501	18	3.5	18	91	0	99	28	31	17	22	1.96
76963--76998	13	2.5	15	82	17	58	38	25	5	30	1.78
76969--77001	13	2.5	13	100	0	66	42	27	6	24	1.78
77430--77503	21	3.5	22	85	12	102	31	21	16	31	1.95
77445--77524	21	3.8	21	85	8	83	31	21	13	33	1.92
78439--78793	79	4.5	79	91	0	559	29	23	11	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79176--79229	22	2.6	20	80	11	63	25	31	14	27	1.95
82584--83120	54	9.9	54	88	0	741	34	19	17	28	1.95
89976--90024	20	2.5	20	83	6	64	36	16	28	18	1.92
90536--90791	45	6.2	44	73	19	221	34	12	25	28	1.91
90528--90769	79	3.1	78	93	1	394	35	11	25	27	1.90
95681--95749	23	3.0	23	82	0	84	20	21	23	34	1.96
98961--98998	20	1.9	20	94	0	67	34	15	34	15	1.90
99566--99633	34	2.0	34	94	0	118	36	10	25	27	1.88
99513--99673	79	2.1	77	91	4	261	36	10	24	28	1.89
99606--99691	43	2.0	43	88	0	127	32	10	25	31	1.90
102259--102305	21	2.2	22	81	11	62	40	2	2	55	1.24
102256--102305	20	2.4	21	86	3	66	42	2	2	54	1.23
102276--102316	21	2.0	21	85	0	55	43	2	4	48	1.37
102537--102582	23	2.0	24	86	4	67	50	2	4	43	1.34
102685--102728	16	2.7	15	80	13	52	36	4	0	59	1.18
103977--104134	21	7.8	20	72	7	86	38	25	17	18	1.92
104100--104275	19	9.6	19	74	16	124	43	20	21	14	1.87
104176--104273	19	5.4	19	85	11	152	46	17	21	14	1.83
104163--104292	33	3.8	33	69	20	113	44	18	23	13	1.85
104282--104414	19	7.6	19	77	20	148	16	24	16	42	1.88
104163--104292	52	2.5	52	100	0	260	44	18	23	13	1.85
104282--104414	52	2.6	51	91	7	225	16	24	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106513--106568	14	3.7	14	80	17	67	44	23	21	10	1.83
106494--106585	32	2.8	33	91	3	159	46	21	20	10	1.81
106457--106590	19	7.6	19	78	15	119	45	23	19	11	1.82
106586--106713	19	7.3	19	73	19	116	8	17	28	45	1.78
106586--106676	33	2.8	33	91	5	141	7	18	28	45	1.77
106757--107320	93	6.1	93	98	0	1080	45	19	12	22	1.83
109021--109110	14	5.7	14	74	23	81	42	23	25	8	1.83
109013--109127	33	3.5	33	95	0	212	45	20	24	9	1.81
109020--109132	19	6.8	18	72	23	88	43	22	24	9	1.83
109144--109200	14	3.7	14	75	20	60	8	24	22	43	1.81
109128--109208	33	2.5	33	95	0	144	8	22	22	46	1.78
109184--109239	21	2.8	20	86	5	76	12	26	17	42	1.85
109185--109261	20	3.8	21	82	6	104	11	25	16	45	1.82
109184--109260	40	1.9	41	94	2	138	12	25	16	44	1.84
109339--109405	33	2.0	33	88	0	98	46	17	23	11	1.82
109586--109639	22	2.5	22	78	3	65	20	14	40	24	1.90
109784--109975	20	9.6	20	79	7	203	19	19	25	35	1.95
109784--109975	60	3.2	59	82	2	233	19	19	25	35	1.95
109962--110044	21	4.0	21	73	6	78	25	16	24	33	1.96
109942--110040	42	2.4	43	77	11	100	21	18	23	37	1.94
111077--111121	15	3.1	15	84	9	58	20	40	2	37	1.65
114600--114647	23	2.0	26	84	12	66	68	6	0	25	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116475--117006	38	14.5	35	80	14	492	43	2	5	47	1.41
116475--117006	77	7.2	75	83	9	563	43	2	5	47	1.41
117067--117134	7	9.9	7	73	20	63	17	1	0	80	0.78
117074--117133	11	5.6	10	78	9	57	18	1	0	80	0.80
117067--117134	25	2.8	24	82	4	84	17	1	0	80	0.78
118363--118397	13	2.6	14	86	9	54	28	0	0	71	0.86
118436--118513	6	13.5	6	86	10	92	14	0	2	83	0.75
118421--118513	33	3.0	32	83	13	106	15	0	2	82	0.76
119235--119291	22	2.6	21	77	22	64	64	5	0	29	1.15
119272--119297	11	2.4	11	100	0	52	73	0	0	26	0.84
119881--119916	18	2.0	18	100	0	72	44	0	5	50	1.25
125867--125925	21	2.8	21	94	0	100	49	25	5	20	1.69
129790--129820	12	2.6	12	94	0	53	19	9	22	48	1.78
130285--130413	41	3.1	41	67	18	104	35	15	17	31	1.91
130203--130721	83	6.3	83	80	3	411	35	17	15	31	1.91
130203--130555	167	2.1	165	82	2	420	36	18	15	30	1.91
132210--132374	54	3.0	55	85	7	212	22	29	18	29	1.98
135450--135615	54	3.0	56	81	4	203	20	28	18	32	1.96
137201--137347	74	2.0	74	81	5	172	46	14	10	27	1.78
142237--142311	31	2.5	30	84	2	96	36	12	12	40	1.79
151375--151461	24	3.7	23	85	3	111	19	13	18	48	1.81
151375--151466	12	7.8	12	73	16	66	18	14	18	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151362--151468	47	2.3	48	82	11	132	19	14	17	48	1.81
151362--151470	24	4.6	24	79	7	109	20	13	17	48	1.80
159245--159325	25	3.3	23	74	17	58	53	2	3	40	1.32
159586--159630	15	3.0	15	100	0	90	60	0	6	33	1.23
163782--163852	3	23.7	3	86	11	101	32	0	0	67	0.91
165110--165236	2	65.0	2	88	7	190	48	0	2	48	1.20
166571--166612	21	2.0	21	90	9	68	21	21	23	33	1.97
166643--166710	17	4.0	17	81	12	86	20	20	36	22	1.95
166846--166903	30	2.0	29	90	10	91	44	15	5	34	1.69
166846--166905	29	2.0	30	93	6	104	43	15	6	35	1.72

Tables:   1   2   3   4