genome.fa.s251.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000251.1 Hibiscus syriacus cultivar Beakdansim tig00000453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  648719

Tables:   1   2   3   4   

This is table  4  of  4  ( 464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485432--485487	23	2.3	23	87	6	76	58	0	1	39	1.08
485434--485489	20	2.9	20	87	12	82	58	0	1	39	1.08
485640--485672	15	2.2	16	89	10	52	57	6	3	33	1.38
487126--487181	30	1.9	28	85	7	76	39	1	0	58	1.08
487126--487188	30	2.1	29	82	8	72	41	1	0	57	1.08
487939--487979	19	2.2	19	91	4	66	65	2	0	31	1.05
488007--488053	19	2.3	20	78	7	51	48	0	6	44	1.28
490404--490441	20	1.9	20	88	0	58	21	26	10	42	1.85
490990--491024	16	2.2	16	94	0	61	57	22	8	11	1.61
491097--491169	14	5.3	14	74	9	51	57	19	13	9	1.63
491095--491201	37	2.9	37	88	1	151	57	17	12	12	1.64
491182--491227	10	4.6	10	91	0	74	63	8	8	19	1.49
491402--491488	14	6.2	14	86	0	111	58	17	12	11	1.62
491383--491488	28	4.0	27	80	7	119	58	16	12	12	1.63
493569--493656	32	2.8	32	76	8	74	48	22	6	21	1.73
500937--500979	20	2.2	20	95	0	77	34	20	20	23	1.96
500945--500992	20	2.3	20	85	3	60	39	16	16	27	1.90
500995--501064	20	3.5	20	64	14	54	28	18	15	37	1.92
500987--501084	40	2.5	40	75	6	99	31	17	14	36	1.90
502019--502072	24	2.2	24	93	0	90	20	18	20	40	1.91
502247--502286	15	2.6	16	92	8	73	80	0	20	0	0.72
502248--502289	19	2.3	18	91	4	66	78	0	21	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504493--504628	62	2.2	63	84	4	177	52	18	2	26	1.56
504605--504637	13	2.4	14	90	5	50	51	21	0	27	1.48
505951--506038	21	4.2	21	72	10	72	27	18	34	20	1.96
506358--506448	21	4.3	22	71	15	59	35	35	10	18	1.86
521588--521636	25	1.9	26	83	4	64	40	14	10	34	1.79
524678--524751	18	3.9	18	86	10	112	18	21	32	27	1.97
524678--524754	39	2.0	39	97	0	145	20	20	31	27	1.98
529901--529974	18	3.9	18	84	10	103	17	20	33	28	1.95
529902--529977	39	1.9	39	97	0	143	18	19	32	28	1.96
532158--532193	9	4.1	9	89	3	56	77	0	11	11	0.99
540673--540784	15	7.5	15	83	14	151	46	0	0	52	1.06
540677--540784	27	3.7	27	79	19	119	47	0	0	51	1.07
540673--540785	42	2.5	45	87	11	153	46	0	0	52	1.06
540688--540837	61	2.3	64	82	11	182	43	0	4	52	1.22
540625--540783	76	2.1	78	87	10	229	48	0	1	49	1.12
540787--540829	22	2.0	22	95	0	77	37	0	11	51	1.39
540764--541406	53	12.1	54	78	13	647	33	0	12	53	1.41
540862--541284	132	3.2	132	80	15	501	34	0	12	53	1.41
540809--541192	79	4.9	80	78	13	388	33	0	12	53	1.43
541160--541202	21	2.2	19	88	12	61	41	0	4	53	1.21
541052--541393	109	3.1	107	77	11	392	33	0	12	53	1.39
541178--541318	32	4.7	32	78	20	153	35	0	10	53	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540974--541483	79	6.8	78	74	18	421	32	0	13	53	1.42
540764--541286	185	2.8	186	78	15	639	34	0	11	53	1.41
541300--541356	24	2.3	25	82	8	64	26	0	17	56	1.41
541337--541511	32	5.1	32	68	21	111	33	0	12	53	1.39
541337--541389	18	3.2	18	71	20	60	28	0	13	58	1.35
541182--541483	77	3.8	77	84	11	339	33	0	13	53	1.40
541373--541437	22	3.0	22	71	8	69	33	0	15	50	1.44
541473--541503	14	2.1	15	94	5	55	35	0	6	58	1.24
541523--541579	30	1.9	30	92	0	96	45	7	7	40	1.58
542572--542706	42	3.2	42	68	26	131	44	8	20	27	1.79
542572--542743	84	2.0	84	100	0	344	45	9	19	26	1.80
546196--546246	19	2.7	18	78	18	59	39	3	5	50	1.45
549053--549124	18	4.0	18	98	0	135	29	27	22	20	1.99
550309--550334	7	3.7	7	100	0	52	57	0	42	0	0.98
555918--555955	18	2.1	18	100	0	76	28	31	21	18	1.97
559650--559788	38	3.7	38	81	1	154	32	10	22	35	1.87
559650--559794	76	1.9	76	85	2	202	33	9	21	35	1.86
562633--562675	19	2.2	20	84	12	63	72	2	4	20	1.14
563041--563067	13	2.1	13	100	0	54	70	0	7	22	1.12
564432--565170	106	7.0	106	86	2	974	24	18	23	33	1.97
566422--566767	171	2.0	173	93	4	592	25	18	20	36	1.95
566815--566885	16	4.4	16	80	16	67	0	12	7	80	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566800--566891	42	2.2	41	81	18	102	1	11	7	79	0.98
566831--566869	10	3.5	11	86	10	53	0	7	7	84	0.77
566858--566891	16	2.1	16	89	10	52	0	14	8	76	1.01
571385--571432	18	2.8	16	79	17	51	72	0	8	18	1.08
571757--571887	12	12.8	10	76	13	58	61	1	2	35	1.18
571827--571889	22	3.2	20	86	8	58	58	0	0	41	0.98
571823--571887	14	5.3	12	83	12	64	58	0	0	41	0.98
571843--571889	2	24.5	2	91	8	80	53	0	0	46	1.00
579679--579726	22	2.2	21	85	10	62	58	0	8	33	1.28
581285--581936	323	2.0	323	99	0	1279	37	13	12	36	1.82
582144--582169	13	2.0	13	100	0	52	46	0	7	46	1.31
583011--583035	2	12.5	2	100	0	50	52	0	0	48	1.00
586256--586625	181	2.0	184	96	2	694	24	9	10	54	1.65
587670--587739	30	2.3	32	80	14	85	32	20	17	30	1.95
587670--587757	31	2.9	31	77	11	92	35	19	18	27	1.95
593456--593508	27	2.0	27	92	0	88	49	5	18	26	1.70
594636--594840	66	3.1	66	77	7	177	30	22	11	35	1.90
594759--594798	21	1.9	21	89	0	62	22	30	12	35	1.91
596091--596143	2	26.0	2	96	3	97	49	1	0	49	1.12
597835--597930	49	2.0	49	100	0	192	21	26	27	25	2.00
600124--600795	85	7.8	85	84	4	805	26	18	19	35	1.95
600111--600795	171	4.0	171	85	3	808	26	18	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606244--606291	15	3.0	16	81	9	62	75	4	0	20	0.97
606300--606341	2	21.0	2	100	0	84	50	0	0	50	1.00
606331--606690	36	10.3	35	76	14	304	44	5	3	46	1.44
606327--606531	38	5.5	38	85	9	271	43	6	1	47	1.39
606513--606553	2	20.5	2	100	0	82	48	0	0	51	1.00
606439--606625	95	2.0	93	94	2	329	44	4	3	47	1.40
606401--606656	131	2.0	131	92	4	428	45	4	3	46	1.41
608176--608234	30	1.9	31	83	10	77	67	5	1	25	1.20
609401--609451	4	11.5	4	89	10	57	72	0	3	23	1.01
609400--609451	27	1.9	27	88	7	79	73	0	3	23	1.00
609401--609451	9	5.8	8	84	15	57	72	0	3	23	1.01
609406--609458	12	4.1	13	86	11	65	71	0	1	26	0.96
609428--609495	35	1.9	35	82	11	86	60	2	2	33	1.27
609484--609794	36	8.5	35	78	10	241	42	10	3	44	1.55
629829--629889	20	3.0	20	95	0	113	49	24	6	19	1.72
647899--647943	20	2.3	20	88	3	65	40	24	0	35	1.56

Tables:   1   2   3   4

The End!