genome.fa.s251.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000251.1 Hibiscus syriacus cultivar Beakdansim tig00000453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  648719

Tables:   1   2   3   4   

This is table  3  of  4  ( 464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351682--351761	16	4.9	16	69	10	54	66	1	0	32	1.00
352137--352186	16	3.0	17	72	16	59	24	22	8	46	1.78
352230--352677	113	4.0	113	88	4	613	28	19	14	37	1.91
355504--355530	14	1.9	14	100	0	54	7	11	0	81	0.87
366090--366140	22	2.3	21	87	12	68	58	0	1	39	1.09
366090--366137	10	4.3	12	77	22	52	58	0	2	39	1.10
366635--366668	2	18.0	2	88	11	54	50	0	0	50	1.00
367371--367413	21	2.0	21	90	0	68	39	9	2	48	1.48
368456--368525	30	2.3	30	80	11	81	67	1	0	31	1.00
368460--368525	18	3.6	18	78	13	64	69	1	0	28	0.97
368459--368527	24	3.0	23	77	12	79	69	1	0	28	0.97
370911--371030	40	3.0	40	96	0	222	34	26	16	22	1.95
378339--378420	40	2.0	40	95	0	146	34	25	15	24	1.95
379367--379433	30	2.2	29	79	10	73	34	17	7	40	1.78
381727--381763	18	2.1	18	100	0	74	62	10	16	10	1.55
385790--385839	23	2.3	23	86	6	77	18	42	22	18	1.90
385821--385860	21	1.9	21	89	0	62	25	40	25	10	1.86
389941--390013	30	2.4	30	86	4	103	32	17	9	39	1.82
395032--395098	35	1.9	35	87	0	98	44	17	0	37	1.49
395433--395466	7	4.9	7	85	0	50	47	0	23	29	1.52
395526--395555	13	2.3	13	100	0	60	63	0	0	36	0.95
395551--395586	3	12.0	3	93	0	63	66	2	0	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397423--397579	20	7.8	20	73	6	93	38	25	17	19	1.93
397423--397579	41	3.9	41	70	11	126	38	25	17	19	1.93
397566--397739	20	8.6	20	78	5	109	34	25	19	20	1.96
397546--397740	40	4.9	39	80	3	174	35	24	19	20	1.95
397546--397739	60	3.2	60	82	2	237	35	24	19	20	1.95
398120--398190	33	2.2	33	94	0	124	11	23	16	47	1.79
398269--398338	19	3.5	20	76	7	81	41	21	24	12	1.88
398269--398342	20	3.8	20	80	7	89	41	20	24	13	1.88
398326--398381	14	3.7	14	78	17	67	42	23	25	8	1.82
398281--398396	32	3.4	32	88	9	151	43	23	23	10	1.84
398414--398503	14	5.7	14	72	23	72	8	24	23	43	1.82
398397--398511	33	3.5	33	96	0	212	9	22	20	46	1.79
398392--398489	19	5.7	18	70	22	77	10	22	22	44	1.82
400204--400486	93	3.1	93	98	0	541	22	12	18	46	1.83
400534--400747	19	12.3	19	73	19	162	45	28	18	7	1.77
400570--400665	33	2.9	32	92	4	156	45	28	18	7	1.76
400550--400717	52	3.2	52	86	6	209	46	27	18	7	1.75
400655--400747	33	2.8	32	91	4	150	46	27	18	7	1.76
400553--400747	85	2.3	85	100	0	390	45	28	18	7	1.76
400604--400747	52	2.8	51	84	6	139	45	29	18	6	1.75
400743--400861	19	6.8	19	75	18	123	10	20	22	47	1.80
400765--400821	14	3.7	14	77	20	60	10	21	22	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400748--400840	33	2.8	33	95	0	168	10	20	21	47	1.80
400812--400877	19	3.4	19	85	6	80	10	15	27	46	1.78
402791--402826	14	2.6	14	95	0	63	33	0	22	44	1.53
402933--403034	19	5.6	19	84	11	151	44	17	23	14	1.86
403024--403316	19	16.7	19	79	17	348	13	21	18	46	1.84
403048--403102	14	3.6	14	76	21	56	10	21	20	47	1.80
403030--403230	33	5.8	33	93	5	294	13	21	17	46	1.83
403024--403288	52	5.0	54	89	9	263	14	22	16	46	1.84
405590--405614	12	2.1	12	100	0	50	0	28	0	72	0.86
405789--405834	24	2.0	23	87	12	67	36	21	15	26	1.93
406510--406719	20	10.5	20	84	2	206	20	17	24	37	1.93
406686--406783	20	4.8	20	77	3	79	21	18	23	36	1.95
406686--406842	41	3.9	41	70	14	110	18	17	25	38	1.93
409055--409134	41	1.9	42	82	2	99	23	20	22	33	1.97
409293--409343	20	2.5	20	96	0	93	19	27	19	33	1.96
409594--409667	21	3.6	21	70	17	64	33	13	14	37	1.86
409528--409680	41	3.7	41	81	4	157	31	16	17	34	1.92
410030--410091	12	5.2	12	79	9	65	69	0	27	3	1.04
410029--410074	24	1.9	24	90	0	74	71	0	26	2	0.97
410029--410078	6	8.2	6	80	10	57	70	0	28	2	0.99
410029--410096	18	3.8	17	72	16	57	70	0	26	2	1.01
428536--429280	10	75.0	10	79	18	321	40	0	1	57	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428605--429258	5	131.0	5	84	12	843	40	0	0	57	1.08
431442--431475	16	2.1	16	88	0	50	44	5	26	23	1.76
432379--432425	21	2.2	21	96	0	85	23	53	12	10	1.70
433103--433136	4	8.8	4	87	6	52	76	2	0	20	0.92
433231--433383	37	4.2	36	85	7	204	44	9	1	45	1.44
433231--433383	71	2.1	72	87	10	224	44	9	1	45	1.44
433312--433498	60	3.2	59	82	8	222	43	8	2	45	1.46
433352--433406	23	2.4	23	100	0	110	47	9	0	43	1.35
433412--433451	21	2.0	21	95	5	73	42	5	2	50	1.37
433460--433603	38	3.9	37	71	17	111	41	11	2	44	1.54
433914--434279	201	1.8	201	88	0	561	27	21	18	32	1.96
434342--434890	186	3.0	184	83	5	736	25	15	21	37	1.93
439757--439800	22	2.0	22	86	0	61	9	15	27	47	1.76
439770--439812	21	2.0	22	86	4	61	11	20	25	41	1.86
440070--440111	12	3.6	11	90	9	66	80	2	0	16	0.81
440205--440418	36	5.9	36	91	3	333	43	8	2	45	1.47
440277--440372	13	7.8	13	66	19	55	45	8	1	44	1.40
440205--440418	72	3.0	72	94	3	369	43	8	2	45	1.47
440397--440446	21	2.3	22	89	6	75	36	6	8	50	1.57
440326--440524	92	2.1	95	83	7	244	40	8	3	47	1.51
446101--446167	13	5.3	13	89	7	102	11	25	0	62	1.29
450988--451043	15	3.7	15	77	13	69	37	1	16	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450985--451113	31	4.4	31	80	16	148	41	2	9	46	1.48
450991--451119	55	2.4	54	81	5	145	41	2	9	46	1.48
451048--451273	5	46.6	5	70	21	110	39	0	5	53	1.29
451057--451269	14	16.2	13	73	19	106	39	0	5	53	1.31
451045--451269	69	3.3	67	77	18	184	40	0	5	53	1.30
451057--451269	57	3.9	56	73	21	118	39	0	5	53	1.31
452438--452487	5	10.4	5	77	14	52	20	0	2	78	0.86
452438--452487	20	2.6	19	82	14	59	20	0	2	78	0.86
452438--452487	14	3.5	14	81	13	57	20	0	2	78	0.86
452937--452995	16	3.4	16	70	20	55	35	6	16	40	1.76
452952--453010	21	3.0	21	67	23	65	35	8	16	38	1.80
452937--453010	37	2.0	37	100	0	148	35	8	16	40	1.78
453554--453617	5	13.6	5	70	23	50	54	1	0	43	1.09
453554--453617	9	6.8	10	70	24	50	54	1	0	43	1.09
453555--453597	13	3.2	14	78	21	56	55	2	0	41	1.12
453553--453616	22	2.9	21	78	19	60	54	1	0	43	1.09
453571--453615	20	2.3	19	85	11	63	53	2	0	44	1.13
453676--453723	20	2.4	20	79	6	53	43	6	0	50	1.27
454043--454636	225	2.7	223	79	6	596	28	20	20	30	1.97
460801--460853	25	2.2	24	90	6	81	13	9	3	73	1.21
466750--466994	44	5.5	45	92	1	406	30	22	7	39	1.82
466750--466994	89	2.8	89	94	1	411	30	22	7	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473627--473871	44	5.5	45	91	1	388	30	22	7	40	1.81
473627--473871	89	2.8	89	91	1	393	30	22	7	40	1.81
475034--475062	14	2.1	14	100	0	58	20	20	20	37	1.94
476929--476981	25	2.2	24	90	6	81	13	9	3	73	1.21
478837--478872	18	2.0	18	100	0	72	33	11	11	44	1.75
481204--481279	21	3.6	21	90	0	125	27	30	13	28	1.94
484550--484586	13	2.7	14	87	8	58	56	2	0	40	1.13
484671--484723	20	2.7	20	85	8	72	47	3	1	47	1.31
484693--484768	35	2.2	34	83	6	91	47	6	1	44	1.37
485432--485487	5	11.6	5	78	14	64	58	0	1	39	1.08

Tables:   1   2   3   4