genome.fa.s2616.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002616.1 Hibiscus syriacus cultivar Beakdansim tig00005294_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1287628

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 819 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249519--249684	77	2.2	77	91	0	269	35	22	15	26	1.94
249594--249649	20	2.8	20	88	0	67	35	25	12	26	1.91
249614--249751	58	2.4	57	85	4	188	34	22	15	27	1.95
249738--249776	20	2.0	20	89	0	60	35	17	12	33	1.88
249541--249838	135	2.2	135	88	4	451	36	21	14	27	1.92
249671--249854	77	2.4	77	84	6	246	35	22	13	28	1.92
249806--249879	20	3.7	20	88	1	112	33	24	10	31	1.90
249910--249978	20	3.5	20	69	15	61	24	13	23	39	1.90
252063--252113	22	2.3	22	100	0	102	21	25	29	23	1.99
257775--257817	19	2.1	21	83	8	54	53	9	0	37	1.33
258510--258557	25	2.0	23	84	8	60	66	6	0	27	1.15
259191--259231	21	1.9	22	85	14	59	51	0	4	43	1.23
264079--264163	40	2.1	40	97	0	161	27	12	18	41	1.87
264978--265003	13	2.0	13	100	0	52	69	0	0	30	0.89
266867--266898	3	10.7	3	100	0	64	34	0	31	34	1.58
268268--268353	32	2.7	32	87	5	122	19	17	8	54	1.67
268839--268870	2	16.0	2	100	0	64	50	0	0	50	1.00
269042--269085	23	1.9	23	85	0	61	18	20	9	52	1.72
270826--270879	23	2.3	23	80	0	63	48	14	22	14	1.81
277122--277171	23	2.2	23	96	0	91	34	6	0	60	1.21
277532--277560	5	5.8	5	100	0	58	82	0	17	0	0.66
278829--278900	35	2.0	36	97	2	137	29	19	11	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287337--287366	14	2.1	14	100	0	60	26	0	0	73	0.84
291852--291920	12	5.8	12	78	8	70	15	15	17	50	1.78
291855--291922	24	2.9	24	82	2	93	17	14	16	51	1.77
295900--295935	18	2.0	18	88	0	54	58	2	11	27	1.46
297091--297184	48	2.0	48	85	4	127	20	12	17	50	1.78
297112--297184	24	3.0	24	79	0	92	19	9	17	53	1.71
298013--298064	26	2.0	27	81	11	63	42	1	1	53	1.23
301688--301753	27	2.4	27	92	0	114	51	31	1	15	1.52
301780--301886	22	4.9	22	97	0	196	14	48	18	17	1.81
302223--302282	20	3.0	20	95	2	102	51	18	13	16	1.76
308644--308699	22	2.5	23	85	2	69	30	26	25	17	1.97
308644--308708	23	2.8	23	86	4	78	26	30	21	21	1.98
311213--311256	23	2.0	23	82	13	56	50	9	2	38	1.47
313455--313493	16	2.4	16	82	0	51	66	0	5	28	1.12
313645--313721	20	3.8	20	72	8	66	36	12	20	29	1.90
313645--313723	40	2.0	40	87	0	113	37	12	20	29	1.89
313745--313804	20	3.0	20	92	7	95	28	15	20	36	1.92
313773--313844	20	3.6	20	81	3	83	18	12	23	45	1.83
323178--323235	19	3.0	20	80	10	66	44	8	1	44	1.44
348699--348767	22	3.1	22	93	0	111	28	15	18	36	1.92
356132--356185	24	2.2	24	93	0	90	20	18	20	40	1.91
356375--356411	14	2.6	14	91	4	56	51	21	21	5	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358408--358442	18	1.9	18	94	0	61	54	22	2	20	1.58
358498--358773	140	2.0	140	94	0	480	28	12	15	43	1.83
358744--358940	20	9.9	20	92	0	304	31	21	19	26	1.97
358991--359042	20	2.6	20	84	0	68	15	17	17	50	1.79
359108--359285	71	2.6	67	82	13	195	51	17	2	29	1.58
360569--360627	21	2.8	21	76	0	64	25	20	33	20	1.97
360569--360680	42	2.7	42	80	2	118	26	16	35	20	1.94
361189--361259	20	3.5	20	88	0	106	38	25	21	15	1.92
361284--361321	20	1.9	20	94	0	67	13	21	18	47	1.82
361288--361383	33	2.9	34	85	3	122	17	20	19	41	1.90
361355--361423	20	3.5	20	84	7	95	18	21	24	34	1.96
361410--361454	20	2.2	20	88	0	63	17	11	20	51	1.75
361719--361764	21	2.2	21	84	0	56	28	36	17	17	1.92
363788--363852	22	3.0	22	84	4	80	23	16	41	18	1.90
363962--364030	19	3.6	19	90	2	84	21	15	31	30	1.95
363977--364032	19	2.9	19	97	0	103	21	16	30	32	1.95
371064--371144	29	2.8	29	80	10	85	37	12	2	48	1.54
372042--372066	12	2.1	12	100	0	50	76	0	24	0	0.80
373399--373435	19	1.9	19	88	0	56	32	27	16	24	1.96
373549--373671	21	6.0	21	78	6	128	26	21	22	29	1.99
373549--373671	40	3.0	40	87	3	174	26	21	22	29	1.99
373824--373862	6	6.5	6	96	0	60	33	46	15	5	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373818--373862	18	2.5	18	85	0	63	33	44	13	8	1.75
374538--374569	6	5.5	6	96	3	57	0	15	53	31	1.43
377765--377795	16	1.9	16	100	0	62	51	19	9	19	1.74
378296--378394	21	4.8	20	75	6	81	37	22	19	21	1.94
378362--378590	20	11.4	20	81	5	230	37	25	17	19	1.94
379283--379329	24	2.0	24	87	8	69	25	14	21	38	1.92
379504--379528	12	2.1	12	100	0	50	72	0	28	0	0.86
381813--382025	33	6.2	33	80	11	223	46	18	22	12	1.82
381951--382005	14	3.6	14	73	21	56	45	20	23	10	1.82
381813--382043	86	2.7	89	91	7	363	46	18	22	12	1.83
381827--382049	53	4.3	51	88	5	288	45	17	22	13	1.84
382020--382135	53	2.2	52	86	3	160	18	23	18	38	1.93
382058--382145	19	4.8	19	82	14	123	13	22	15	47	1.81
382236--382272	14	2.6	14	91	0	65	45	21	0	32	1.52
384197--384314	19	6.4	19	78	10	129	44	24	18	11	1.83
384197--384314	33	3.2	38	84	9	147	44	24	18	11	1.83
384213--384345	33	3.9	33	86	5	149	46	20	20	12	1.83
384346--384437	19	5.4	18	72	24	83	7	17	28	46	1.75
384362--384420	14	3.9	14	76	20	64	6	16	28	47	1.72
384346--384469	33	3.7	33	91	1	185	8	17	27	45	1.78
384395--384451	14	3.7	14	72	20	51	8	22	24	43	1.81
384567--384882	93	3.4	93	98	0	614	45	18	13	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386569--386665	20	5.2	20	72	18	100	46	17	24	11	1.81
386567--386631	21	3.1	21	82	4	96	47	15	26	10	1.78
386616--386672	14	3.7	14	75	20	60	43	22	24	8	1.81
386567--386689	33	3.5	33	90	8	165	46	18	24	10	1.81
386706--386762	14	3.7	14	72	20	51	8	26	21	43	1.81
386690--386769	33	2.4	33	91	0	124	10	22	18	48	1.77
386717--386823	21	5.6	20	72	16	93	13	22	17	46	1.82
386903--386973	33	2.2	33	92	0	115	47	16	22	12	1.80
387354--387504	20	7.6	20	86	3	196	19	18	27	34	1.95
389463--389560	21	4.7	21	71	10	76	35	20	20	23	1.96
389567--389839	20	13.4	20	75	13	213	39	24	17	18	1.92
389567--389839	41	6.7	41	86	6	337	39	24	17	18	1.92
389545--389839	122	2.4	122	90	3	443	38	24	17	18	1.93
393243--393390	33	4.3	33	80	11	188	43	20	22	14	1.87
393272--393299	14	2.0	14	100	0	56	42	21	21	14	1.88
393257--393390	19	7.5	19	74	18	117	43	20	21	14	1.88
393478--393514	14	2.6	14	91	0	65	45	21	0	32	1.52
395439--395476	14	2.7	14	91	0	58	42	23	23	10	1.85
395508--395564	14	3.7	14	72	20	51	10	19	26	43	1.83
395503--395648	33	4.4	33	92	0	238	10	20	21	46	1.81
395522--395688	19	9.4	19	67	20	94	12	19	21	46	1.83
395736--396155	93	4.5	93	93	1	700	48	19	10	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395963--395995	17	1.9	17	88	11	50	45	15	15	24	1.84
397735--397788	25	2.1	25	83	10	65	59	16	7	16	1.59
397844--397906	20	3.2	20	75	8	74	46	15	23	14	1.83
398516--398734	20	10.7	20	75	12	194	17	17	26	37	1.92
398518--398734	41	5.3	41	85	6	296	17	17	26	38	1.92
398518--398734	81	2.6	82	84	9	289	17	17	26	38	1.92
398515--398772	20	12.6	20	72	10	173	17	17	25	39	1.92
400012--400050	18	2.2	18	86	9	53	33	15	2	48	1.58
400167--400191	12	2.1	12	100	0	50	40	8	12	40	1.72
400670--400698	14	2.0	15	93	6	51	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7