genome.fa.s2616.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002616.1 Hibiscus syriacus cultivar Beakdansim tig00005294_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1287628

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 819 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1174150--1174308	36	4.6	35	73	13	141	27	20	13	38	1.91
1174280--1174338	28	2.1	28	90	0	91	32	13	15	38	1.86
1174087--1174404	167	1.9	168	80	8	371	28	19	12	38	1.89
1174321--1174440	37	3.2	36	73	9	116	26	17	13	42	1.86
1174454--1174494	15	2.7	15	96	0	73	21	26	24	26	2.00
1174521--1174567	24	1.9	25	82	4	60	31	19	10	38	1.86
1174484--1174604	61	2.0	61	86	0	170	34	19	9	36	1.85
1175091--1175476	136	2.8	136	92	1	657	33	18	21	25	1.96
1177411--1177458	15	2.8	18	75	18	57	37	4	6	52	1.46
1183123--1183168	20	2.3	20	96	0	83	28	15	32	23	1.95
1183848--1183879	3	11.3	3	87	12	50	65	0	0	34	0.93
1184137--1184949	52	15.6	52	93	0	1383	29	25	16	28	1.97
1184236--1184361	24	4.8	26	63	13	71	30	25	15	29	1.95
1184815--1184899	28	3.2	27	63	13	68	32	23	15	28	1.95
1184945--1185224	55	5.1	55	91	1	474	28	28	15	28	1.96
1184945--1185224	108	2.6	110	93	2	492	28	28	15	28	1.96
1186513--1186547	14	2.6	13	91	8	61	0	14	0	85	0.59
1186510--1186627	8	14.6	8	76	15	75	8	11	0	80	0.90
1186511--1186565	28	1.9	28	85	3	74	3	10	0	85	0.72
1186510--1186546	11	3.5	11	85	7	51	0	13	0	86	0.57
1186504--1186628	39	3.3	38	80	14	118	9	10	0	80	0.92
1194653--1194698	20	2.3	20	100	0	92	26	15	34	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1195374--1195405	3	11.3	3	87	12	50	65	0	0	34	0.93
1195374--1195404	11	2.8	11	90	0	53	67	0	0	32	0.91
1196250--1196280	15	2.1	15	93	0	53	32	22	0	45	1.53
1207612--1207655	17	2.6	17	85	7	54	25	15	27	31	1.96
1207628--1207683	21	2.7	21	88	5	78	25	12	30	32	1.92
1208362--1208413	23	2.3	23	86	6	70	32	15	28	23	1.95
1208921--1208996	22	3.5	22	96	0	143	21	31	13	34	1.91
1222792--1222829	16	2.4	16	100	0	76	65	18	0	15	1.27
1223195--1223247	23	2.3	23	86	0	70	28	22	24	24	2.00
1223387--1223428	19	2.2	20	86	4	59	61	4	2	30	1.29
1229760--1229801	21	2.0	21	95	0	75	47	7	14	30	1.71
1232793--1232856	30	2.2	28	88	5	92	17	26	25	31	1.97
1232793--1232862	9	7.3	9	78	12	59	17	28	24	30	1.97
1232866--1232927	22	3.0	22	75	22	80	19	46	24	9	1.79
1232868--1232916	17	2.9	17	93	0	89	20	46	24	8	1.77
1232917--1232947	7	4.4	7	95	0	53	16	25	29	29	1.96
1240101--1240194	10	9.8	9	72	13	62	18	26	25	29	1.98
1240102--1240194	29	3.2	28	84	6	105	17	26	25	30	1.97
1240130--1240195	19	3.5	19	82	13	82	15	27	30	27	1.96
1243410--1243497	28	3.2	28	76	17	87	52	1	0	46	1.08
1243414--1243567	6	25.3	6	69	17	63	52	1	1	44	1.20
1243412--1243503	14	6.3	15	73	17	70	52	1	0	46	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1243491--1243640	31	4.7	30	82	12	153	52	3	3	40	1.34
1243503--1243555	14	3.6	14	73	14	52	52	3	3	39	1.37
1243529--1243575	24	1.9	25	82	4	60	55	4	2	38	1.31
1243489--1243644	65	2.5	64	82	13	189	51	3	3	41	1.36
1243623--1243664	22	2.0	21	90	9	68	50	9	4	35	1.56
1243659--1243702	22	2.0	22	82	8	54	38	6	9	45	1.63
1243675--1243720	18	2.6	17	79	3	56	41	6	8	43	1.61
1243668--1243816	33	4.5	33	81	10	153	46	2	8	42	1.47
1243711--1243799	20	4.8	19	68	28	66	52	1	6	39	1.35
1243792--1243894	20	5.1	20	69	12	75	41	6	6	44	1.57
1243957--1244082	7	17.6	7	71	16	55	47	2	7	42	1.45
1243957--1244121	2	78.0	2	67	18	68	47	2	7	42	1.44
1243970--1244088	14	8.5	14	73	16	79	49	1	7	41	1.41
1244035--1244156	35	3.5	35	82	6	142	50	0	6	42	1.34
1244035--1244132	33	2.9	33	86	3	124	50	1	6	42	1.34
1244162--1244199	14	2.7	14	91	0	58	44	23	0	31	1.54
1244243--1244300	29	1.9	31	89	6	93	41	3	8	46	1.51
1244313--1244438	35	3.8	33	76	20	120	43	6	5	44	1.53
1244295--1244383	28	3.2	28	82	4	101	42	6	7	42	1.60
1244333--1244436	31	3.4	31	84	10	108	43	6	5	44	1.54
1244313--1244436	66	1.9	66	83	12	166	44	6	5	43	1.53
1244531--1245227	209	3.3	216	89	3	1029	28	11	8	51	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1245882--1245949	30	2.2	30	89	2	100	22	17	13	47	1.82
1253831--1253882	7	7.6	7	78	8	54	50	34	0	15	1.45
1253831--1253882	21	2.5	21	87	9	72	50	34	0	15	1.45
1254877--1254932	27	2.1	27	100	0	112	21	19	21	37	1.94
1256472--1256562	24	3.8	24	89	2	139	23	27	23	26	2.00
1259179--1259284	21	5.3	21	67	13	53	42	2	0	53	1.22
1259394--1259496	18	5.9	18	78	11	124	42	5	4	46	1.49
1259386--1259489	51	2.0	51	94	0	181	44	5	4	45	1.49
1261247--1261608	18	21.2	18	74	15	324	41	6	6	45	1.55
1261247--1261368	51	2.4	51	95	1	219	40	6	6	45	1.56
1261285--1261436	67	2.2	68	94	3	270	40	5	7	46	1.56
1261247--1261607	118	3.0	118	86	6	457	41	6	6	45	1.55
1261354--1261593	51	4.7	51	89	2	342	41	6	6	45	1.54
1261284--1261699	18	23.8	18	71	17	245	43	6	5	44	1.54
1261623--1261699	32	2.5	32	89	4	113	54	6	1	37	1.35
1261693--1261732	15	2.5	17	84	12	57	42	0	2	55	1.13
1263248--1263757	108	4.8	107	82	6	595	40	11	13	34	1.80
1263248--1263757	214	2.4	212	83	7	618	40	11	13	34	1.80
1270164--1270201	20	2.0	19	85	10	51	26	23	21	28	1.99
1275450--1275504	23	2.4	23	75	0	56	23	21	23	30	1.99
1275491--1275589	24	4.2	24	78	12	80	25	25	22	27	2.00
1275537--1275589	24	2.2	24	93	3	90	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1275669--1275716	18	2.6	18	86	3	60	54	4	10	31	1.53
1280695--1280754	23	2.7	22	82	7	77	28	16	23	31	1.96
1280713--1280782	23	3.0	23	83	4	86	27	24	21	27	1.99
1280685--1280781	24	4.2	24	79	10	87	26	21	21	29	1.99
1281636--1282018	54	7.1	54	78	5	355	41	18	12	27	1.87
1281582--1281820	109	2.2	109	85	5	315	42	20	12	24	1.86
1281636--1282018	107	3.6	107	80	6	400	41	18	12	27	1.87
1281614--1282018	161	2.5	162	79	4	442	41	18	12	26	1.87
1282086--1282157	19	3.7	19	82	12	85	36	11	19	33	1.87
1282276--1282393	51	2.3	52	82	7	143	26	15	8	50	1.72
1283137--1283201	2	32.5	2	100	0	130	49	0	0	50	1.00

Tables:   1   2   3   4   5   6   7

The End!