genome.fa.s2844.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002844.1 Hibiscus syriacus cultivar Beakdansim tig00005856_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1090609

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 551 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931132--931169	19	2.1	19	90	5	60	71	5	7	15	1.28
932496--932539	3	14.7	3	95	0	79	63	0	2	34	1.07
932856--933523	113	5.9	113	90	2	864	30	19	12	37	1.89
934249--935133	82	10.8	83	93	3	1519	36	21	13	28	1.92
936270--936321	15	3.4	15	79	12	61	0	13	0	86	0.57
936270--936333	18	3.6	18	80	12	62	0	15	0	84	0.63
936270--936335	33	2.0	32	88	2	96	0	15	0	84	0.61
936285--936336	5	11.0	5	82	12	65	0	15	0	84	0.62
936269--936336	14	4.7	14	83	10	84	0	17	0	82	0.67
946972--947022	18	2.9	17	75	16	50	72	1	0	25	0.95
947790--947827	19	2.1	19	90	5	60	71	5	7	15	1.28
947978--948032	28	2.0	27	82	10	67	45	1	10	41	1.50
949137--949198	3	20.7	3	89	0	97	61	0	1	37	1.06
951972--951998	13	2.1	13	100	0	54	44	0	7	48	1.31
962841--962866	11	2.4	11	100	0	52	34	15	7	42	1.75
966603--966652	23	2.2	23	96	0	91	28	6	26	40	1.79
969767--969832	27	2.4	27	84	0	87	25	22	30	21	1.99
971746--971797	23	2.3	23	100	0	104	26	3	26	42	1.73
975310--975379	2	35.0	2	100	0	140	50	0	0	50	1.00
975590--975683	30	3.1	30	80	3	91	37	13	20	28	1.91
977077--977121	2	23.0	2	95	4	83	48	0	0	51	1.00
977245--977283	14	2.9	14	80	3	53	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
977239--977284	20	2.4	18	83	16	58	63	0	0	36	0.95
980386--980585	100	2.0	100	88	7	300	36	9	5	49	1.58
987978--988004	2	13.5	2	100	0	54	0	0	51	48	1.00
1005657--1005773	39	3.0	39	75	9	103	30	21	25	22	1.98
1019701--1019741	2	21.5	2	85	9	59	56	0	0	43	0.99
1020465--1020564	35	2.8	36	86	6	130	31	16	15	38	1.89
1021025--1021895	98	8.4	103	82	7	806	21	21	25	32	1.98
1021025--1021895	206	4.2	205	78	9	687	21	21	25	32	1.98
1021567--1021738	55	3.3	55	68	26	176	17	23	27	30	1.97
1021622--1021780	43	3.4	43	67	26	126	16	22	27	33	1.96
1022420--1022585	65	2.6	65	92	1	271	36	11	19	32	1.87
1022485--1022923	102	4.3	102	92	0	711	36	12	19	30	1.89
1022550--1022824	37	7.9	36	66	20	156	37	13	20	29	1.90
1022866--1022958	36	2.6	36	87	1	125	38	12	22	25	1.90
1023817--1023867	22	2.3	22	96	0	93	25	11	27	35	1.91
1024461--1024519	20	2.9	21	80	5	59	1	13	6	77	1.03
1024494--1024536	22	2.0	23	86	9	63	0	20	4	74	1.00
1029214--1029273	24	2.6	24	79	12	63	65	1	5	28	1.23
1029245--1029282	16	2.4	16	82	4	51	63	0	5	31	1.17
1029956--1030038	35	2.3	37	81	6	98	32	10	13	43	1.78
1029979--1030047	35	1.9	37	91	5	115	28	13	14	43	1.83
1036170--1036199	12	2.5	12	94	0	51	16	3	16	63	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043217--1043246	15	2.0	15	93	0	51	36	0	10	53	1.35
1044299--1044344	20	2.2	22	84	7	60	52	4	4	39	1.41
1045314--1045340	2	13.5	2	100	0	54	51	0	0	48	1.00
1047177--1047207	3	10.3	3	100	0	62	35	0	0	64	0.94
1047995--1048025	16	1.9	16	93	0	53	64	0	32	3	1.09
1050808--1050833	7	3.7	7	100	0	52	15	15	0	69	1.20
1053776--1053828	25	2.2	22	81	18	61	83	0	15	1	0.74
1053755--1053827	11	6.9	10	76	18	60	79	0	19	1	0.81
1053771--1053816	5	9.8	5	78	21	55	82	0	17	0	0.67
1053770--1053828	11	5.5	10	78	13	64	83	0	15	1	0.74
1055990--1056209	114	1.9	114	88	1	334	34	15	21	29	1.94
1058647--1058700	21	2.5	22	87	6	92	33	11	14	40	1.82
1059379--1059740	76	4.8	76	97	0	683	24	19	21	34	1.96
1059865--1060228	76	4.8	76	95	0	656	24	18	21	35	1.96
1059252--1060611	488	2.8	485	94	1	2393	27	17	18	36	1.93
1060351--1060611	76	3.4	76	94	1	450	23	19	21	34	1.96
1060745--1060799	3	18.3	3	96	0	101	36	0	0	63	0.95
1061687--1061745	16	3.6	16	72	17	57	32	10	5	52	1.57
1062877--1062914	20	2.0	20	84	5	51	68	7	10	13	1.39
1070494--1070557	31	2.1	31	90	0	101	51	1	1	45	1.20
1070505--1070627	39	3.2	38	71	24	96	44	2	3	49	1.31
1073032--1073081	19	2.6	19	100	0	100	16	8	54	22	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074172--1074214	21	2.0	21	86	9	59	46	2	0	51	1.13
1078257--1078309	27	2.1	26	82	10	65	64	3	3	28	1.28
1080524--1080563	20	2.0	21	90	5	64	27	20	20	32	1.97
1081862--1082351	124	3.9	124	86	4	637	35	15	17	31	1.91
1083629--1083669	16	2.6	16	100	0	82	19	12	17	51	1.76

Tables:   1   2   3   4   5

The End!