genome.fa.s3112.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003112.1 Hibiscus syriacus cultivar Beakdansim tig00006507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  642031

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 491 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330240--330332	41	2.3	41	100	0	186	17	24	18	39	1.91
331726--331815	39	2.3	38	83	7	110	41	14	11	33	1.81
332642--332747	3	35.3	3	86	3	115	40	0	0	58	1.04
333874--333914	20	2.1	20	86	4	57	29	2	2	65	1.18
333974--334011	12	3.2	12	81	3	51	28	2	2	65	1.19
334160--334194	16	2.1	17	89	5	54	48	0	0	51	1.00
334156--334202	16	2.6	18	77	19	53	46	0	0	53	1.00
334777--334814	15	2.8	13	88	11	51	23	5	2	68	1.23
340761--340986	114	2.0	114	90	0	353	31	15	21	30	1.95
343084--343195	54	2.1	54	88	3	163	38	16	23	21	1.93
344242--345193	76	12.5	76	96	0	1708	22	20	21	34	1.96
344242--345193	153	6.2	152	96	0	1708	22	20	21	34	1.96
345319--345451	3	43.7	3	87	3	185	36	0	1	61	1.05
346746--346783	12	3.2	12	81	3	51	28	2	2	65	1.19
346791--346822	2	16.0	2	93	0	55	53	0	0	46	1.00
346940--346973	16	2.1	16	88	0	50	47	0	0	52	1.00
360953--360996	17	2.8	16	80	19	56	40	2	0	56	1.11
360953--360995	16	2.7	15	77	22	52	41	2	0	55	1.12
362218--362274	17	3.2	17	85	5	60	77	1	15	5	1.03
362217--362258	18	2.3	18	84	15	59	78	2	16	2	0.96
363542--363583	12	3.6	11	82	17	50	73	0	2	23	0.94
363662--363730	34	2.0	35	88	2	104	43	7	2	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363716--363971	37	6.9	36	77	9	221	43	7	3	45	1.49
363964--364004	4	10.5	4	89	5	66	75	0	0	24	0.80
364192--364321	65	2.0	65	96	0	242	23	23	23	30	1.99
364419--365389	84	11.7	83	82	4	1050	23	21	25	29	1.99
364419--365389	249	3.9	246	83	4	1148	23	21	25	29	1.99
364450--365389	165	5.7	164	87	3	1265	23	21	26	29	1.99
369421--369477	17	3.2	17	85	5	60	77	1	15	5	1.03
369420--369461	18	2.3	18	84	15	59	78	2	16	2	0.96
370539--370578	3	13.7	3	85	15	57	70	0	2	27	1.01
370660--370725	35	1.9	35	87	3	98	45	9	3	42	1.51
370711--370966	37	6.9	36	78	9	230	43	7	3	46	1.48
370959--370991	4	8.5	4	86	6	50	75	0	0	24	0.80
371016--371080	2	32.5	2	100	0	130	50	0	0	49	1.00
375801--375913	60	1.9	60	85	7	158	38	15	1	44	1.58
376050--376133	44	1.9	44	83	9	109	29	7	16	46	1.74
376993--377042	23	2.3	21	75	15	57	16	30	6	48	1.70
376999--377077	23	3.4	23	82	5	97	16	27	11	44	1.82
378069--378094	13	2.0	13	100	0	52	46	15	15	23	1.83
378311--378424	59	1.9	59	82	8	142	39	19	13	28	1.89
379286--379359	29	2.6	30	77	16	77	44	0	1	54	1.08
379382--379467	27	3.1	27	71	18	70	47	1	2	48	1.22
379475--379525	23	2.2	23	85	0	66	49	1	1	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379784--379813	15	2.0	15	93	0	51	33	6	16	43	1.74
380124--380182	28	2.1	28	96	3	111	15	16	22	45	1.84
380968--381026	31	1.9	30	89	3	91	62	0	11	25	1.29
381393--381561	60	2.8	60	80	3	196	37	5	24	32	1.78
385648--385700	22	2.4	22	96	0	97	5	32	35	26	1.80
392912--392956	20	2.2	20	96	0	81	35	15	15	33	1.89
402368--402394	14	1.9	14	100	0	54	25	29	14	29	1.95
402820--402854	18	1.9	18	88	11	54	54	20	2	22	1.58
402822--402864	18	2.3	19	80	4	52	58	13	2	25	1.48
404722--404756	12	2.8	13	91	4	54	42	8	5	42	1.59
406855--406897	20	2.2	20	86	0	59	34	18	11	34	1.87
408022--408069	20	2.3	21	78	7	53	52	0	6	41	1.27
412176--412211	12	3.3	11	92	7	56	27	8	11	52	1.65
412298--413971	4	419.2	4	99	0	3327	50	24	0	25	1.50
415154--415811	81	8.1	81	90	0	985	37	14	18	29	1.91
418042--418185	70	2.0	71	90	4	229	25	11	25	37	1.90
418667--418902	81	2.9	81	87	2	366	37	13	20	28	1.90
418667--418982	162	2.0	161	80	8	365	37	14	20	27	1.92
421550--421670	40	3.0	40	98	0	233	25	12	28	33	1.92
427117--427176	29	2.0	28	81	15	68	25	23	0	51	1.48
428045--428095	26	2.0	26	88	0	75	29	21	23	25	1.99
428305--428351	13	3.8	13	80	11	53	17	6	4	72	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433610--433669	16	3.8	16	76	8	61	21	3	1	73	1.07
435516--435558	19	2.3	18	85	14	61	69	0	16	13	1.19
436360--436418	9	6.7	9	73	24	54	8	10	1	79	1.00
436376--436418	13	3.2	12	77	22	50	6	9	2	81	0.95
438549--438589	16	2.6	16	96	0	73	48	14	9	26	1.75
443127--443167	17	2.4	17	87	4	55	65	2	19	12	1.36
445252--445284	6	5.5	6	100	0	66	0	18	15	66	1.25
447882--448278	201	2.0	201	99	0	785	25	17	17	40	1.90
448869--448986	53	2.2	53	96	1	220	27	24	4	43	1.73
449319--449402	8	10.6	8	73	17	52	4	16	0	78	0.91
449324--449410	20	4.7	18	72	22	58	4	17	0	78	0.92
449344--449410	9	7.7	9	80	15	54	2	16	0	80	0.83
449365--449407	5	8.8	5	80	14	54	0	16	0	83	0.64
449352--449440	32	2.8	31	83	3	97	2	17	1	78	0.91
449318--449438	55	2.2	53	80	14	131	4	18	0	76	0.99
449344--449440	10	9.4	10	77	14	81	3	17	1	78	0.94
449392--449444	21	2.5	22	85	11	67	1	18	3	75	1.05
449363--449450	31	2.8	31	79	5	88	1	15	3	79	0.92
455382--455410	12	2.3	13	94	5	51	68	0	0	31	0.89
455920--455944	3	8.3	3	100	0	50	68	0	0	32	0.90
455901--455993	41	2.3	40	81	13	104	63	2	1	33	1.13
456289--456332	11	4.4	11	75	21	51	50	4	45	0	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456288--456336	9	5.2	9	83	9	62	53	4	42	0	1.20
456288--456324	18	2.1	18	100	0	74	51	5	43	0	1.24
456298--456335	11	3.6	11	86	6	53	52	2	44	0	1.14
456288--456336	20	2.6	18	84	12	62	53	4	42	0	1.20
456814--457235	85	5.0	85	90	0	594	27	18	19	34	1.95
461556--461598	16	2.7	16	88	0	59	65	0	20	13	1.27
463177--463668	85	5.8	85	87	0	608	27	17	19	35	1.94
467911--467958	21	2.3	21	82	10	62	72	0	2	25	0.95
468273--468386	37	3.0	37	69	20	90	64	3	1	30	1.21
472785--472946	60	2.7	60	84	7	222	42	3	20	33	1.70
474696--474761	19	3.1	21	74	14	64	45	0	1	53	1.09
480862--480909	23	2.1	23	92	0	78	39	8	18	33	1.81
480940--480999	23	2.6	23	83	0	66	40	6	18	35	1.77
480834--481074	87	2.8	87	89	0	365	43	9	14	32	1.77
481125--481748	198	3.1	199	87	3	884	31	15	14	38	1.87
481849--481933	30	2.8	31	80	15	83	48	1	1	49	1.16
481810--481903	40	2.3	41	81	15	106	51	1	1	46	1.15
481860--481945	14	6.2	14	69	11	52	47	1	1	50	1.16
482086--482126	2	20.5	2	100	0	82	48	0	0	51	1.00
482314--482354	21	2.0	21	90	0	64	41	19	0	39	1.52
482608--482698	30	3.1	30	80	10	82	50	1	1	47	1.15
482616--482717	14	7.2	14	70	11	57	48	1	0	49	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482630--482698	28	2.5	28	74	6	70	49	1	1	47	1.19
482681--482725	14	3.1	15	84	6	58	55	2	0	42	1.12
483036--483085	23	2.2	23	85	0	64	32	16	10	42	1.81
483020--483337	87	3.7	87	93	0	528	32	14	10	42	1.79
483122--483166	23	2.0	23	90	0	72	37	17	11	33	1.85
483208--483259	23	2.3	23	86	0	77	36	15	7	40	1.76
483287--483389	23	4.5	23	96	0	179	34	20	7	36	1.81
486341--486445	8	14.4	8	65	20	52	41	1	10	45	1.49
486366--486416	21	2.4	21	100	0	102	41	0	9	49	1.36
488566--488651	32	2.7	32	81	3	93	37	29	22	11	1.89

Tables:   1   2   3   4   5