Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003112.1 Hibiscus syriacus cultivar Beakdansim tig00006507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  642031

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 491 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
623965--624003
3
12.7
3
89
5
60
35
2
0
61
1.10
624013--624099
33
2.6
33
83
0
111
50
26
0
22
1.49
627157--627192
18
2.0
18
100
0
72
38
5
16
38
1.72
627237--627272
18
2.0
18
94
0
63
41
2
16
38
1.63
627677--627715
20
2.0
20
85
10
53
64
0
2
33
1.08
628122--628163
19
2.2
19
87
8
59
30
35
16
16
1.92
628157--628196
19
2.1
19
100
0
80
35
25
15
25
1.94
631378--631481
52
2.0
52
87
9
151
33
11
17
37
1.86
632778--632833
24
2.3
24
96
0
103
46
3
8
41
1.52
633906--634028
56
2.1
59
82
8
155
43
14
12
30
1.82
635979--636043
3
22.7
3
87
6
91
33
0
1
64
1.03

Tables:   1   2   3   4   5

The End!