genome.fa.s3407.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003407.1 Hibiscus syriacus cultivar Beakdansim tig00007179_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  758105

Tables:   1   2   3   4   

This is table  2  of  4  ( 393 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306334--306411	33	2.4	33	91	0	120	12	23	21	42	1.87
306499--306535	14	2.6	14	86	0	56	48	21	0	29	1.50
308385--308539	39	4.2	37	76	11	131	40	24	21	13	1.89
308404--308508	20	5.5	19	89	3	131	37	23	24	14	1.92
308498--308554	14	3.8	14	78	17	69	47	26	17	8	1.77
308479--308559	32	2.5	32	100	0	162	48	24	18	8	1.76
308566--308647	19	4.6	19	79	14	95	12	20	21	45	1.84
308602--308686	20	4.4	19	83	5	91	14	22	23	40	1.90
309157--309201	18	2.5	18	85	0	63	15	15	42	26	1.87
310519--310556	20	1.9	20	88	0	58	50	21	15	13	1.78
310820--310863	22	2.0	22	95	0	79	18	15	45	20	1.85
311051--311144	20	4.7	20	80	2	89	23	18	24	34	1.96
311071--311206	41	3.3	42	78	5	118	20	20	20	38	1.94
311031--311145	20	5.7	20	78	5	88	23	17	23	35	1.95
311134--311226	21	4.6	20	79	4	105	18	23	18	39	1.92
311134--311229	41	2.3	41	96	0	174	18	22	17	40	1.91
311257--311304	21	2.3	21	100	0	96	29	29	14	27	1.95
315382--315473	47	2.0	46	87	10	134	30	11	33	23	1.91
316272--316324	25	2.0	28	89	10	85	50	3	0	45	1.19
319219--319274	22	2.5	23	88	2	78	7	17	16	58	1.59
319236--319285	23	2.2	23	85	0	64	10	20	12	58	1.62
320206--320256	25	2.1	24	82	10	59	39	0	5	54	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327400--327526	3	42.3	3	90	0	92	0	19	34	45	1.51
327409--327538	6	21.7	6	85	0	107	0	17	33	48	1.48
327417--327529	9	12.6	9	85	0	109	0	18	33	47	1.49
329383--329425	2	21.5	2	100	0	86	51	0	0	48	1.00
330977--331273	6	49.5	6	99	0	585	49	32	0	17	1.47
334619--334666	20	2.3	21	82	13	55	47	0	0	52	1.00
339326--339390	20	3.2	20	71	16	60	64	0	3	32	1.09
339364--339389	12	2.2	12	100	0	52	69	0	0	30	0.89
339330--339412	42	2.0	41	86	6	114	62	1	2	33	1.16
340991--341035	21	2.0	24	87	12	69	53	2	0	44	1.13
341730--341762	17	2.0	17	88	5	50	69	3	0	27	1.03
342575--342610	18	2.0	18	100	0	72	33	0	5	61	1.19
344124--344182	22	2.7	22	78	0	73	54	6	5	33	1.49
346612--346646	3	11.3	3	93	6	61	31	0	0	68	0.90
346615--346646	16	2.0	16	100	0	64	31	0	0	68	0.90
346612--346658	22	2.1	22	88	7	69	31	0	2	65	1.04
347263--347293	12	2.6	12	94	0	53	83	9	6	0	0.79
350040--350078	18	2.2	18	86	4	53	20	10	12	56	1.65
352042--352119	26	3.2	25	67	22	76	24	23	10	42	1.85
352057--352131	20	3.5	20	70	20	62	26	25	10	37	1.89
353950--353999	4	13.2	4	83	12	70	52	22	0	26	1.48
354318--354342	11	2.3	11	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354676--354773	36	2.8	35	76	6	101	34	18	12	34	1.88
355028--355098	28	2.5	28	86	8	108	33	8	14	43	1.75
355028--355098	27	2.6	27	88	6	106	33	8	14	43	1.75
355028--355113	28	3.1	27	85	9	93	33	8	12	45	1.72
355109--355209	50	2.0	52	92	5	170	31	13	19	34	1.91
355348--355572	120	1.9	119	80	8	269	30	13	12	43	1.81
355470--355594	64	2.0	63	88	1	187	32	13	11	43	1.79
355757--355785	15	1.9	15	100	0	58	27	13	6	51	1.66
355760--355794	15	2.3	15	90	0	52	37	17	2	42	1.64
356532--356897	43	8.5	43	73	14	263	24	32	19	22	1.97
356480--356758	83	3.4	83	93	0	452	25	32	20	22	1.98
356645--356892	134	1.9	134	93	1	426	25	33	19	20	1.96
357113--357147	3	11.3	3	93	6	61	31	0	0	68	0.90
357116--357147	16	2.0	16	100	0	64	31	0	0	68	0.90
357113--357159	22	2.1	22	88	7	69	31	0	2	65	1.04
357760--357795	14	2.6	14	95	0	63	83	8	8	0	0.82
365573--365607	2	17.5	2	100	0	70	48	0	0	51	1.00
365757--365837	25	2.9	30	76	17	109	28	12	1	58	1.42
371745--371788	14	3.4	14	70	23	51	13	11	18	56	1.66
371963--372071	23	4.7	23	85	5	112	11	13	17	56	1.66
371963--372090	24	5.4	23	83	4	130	12	12	17	57	1.66
371963--372091	47	2.7	47	81	1	141	12	12	17	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372337--372377	16	2.6	16	88	3	57	36	4	19	39	1.73
387872--388078	64	3.2	63	78	11	206	27	17	23	31	1.97
388445--388499	15	3.5	15	72	13	56	36	25	0	38	1.56
388425--388506	33	2.5	34	94	4	141	30	34	0	35	1.58
389844--389878	13	2.7	13	87	12	54	54	0	8	37	1.31
389927--389951	13	1.9	13	100	0	50	52	8	8	32	1.60
394112--394333	118	1.9	118	80	5	261	27	14	9	48	1.74
395606--395643	20	1.9	20	84	10	51	42	15	0	42	1.47
395800--395868	23	3.0	23	80	0	93	28	27	26	17	1.97
399828--399926	21	4.8	20	72	6	72	36	23	19	21	1.95
399894--400086	20	9.6	20	84	5	246	34	27	19	18	1.95
400466--400536	33	2.2	33	94	0	124	11	23	16	47	1.79
400622--400695	21	3.5	20	80	8	94	47	17	20	14	1.83
400683--400738	14	3.7	14	78	17	67	42	23	25	8	1.82
400676--400754	32	2.4	33	91	4	133	46	22	21	8	1.79
400750--400863	19	6.1	19	76	13	103	11	24	18	45	1.82
400780--400863	41	2.1	41	88	2	125	10	25	16	47	1.79
400779--400861	20	4.2	20	81	6	114	12	24	16	46	1.81
402547--402862	93	3.4	93	98	0	605	22	13	19	44	1.85
402960--403039	19	4.4	19	75	16	71	45	27	17	10	1.80
402976--403069	33	2.8	33	91	0	152	47	26	17	8	1.75
402995--403051	14	3.7	14	75	20	60	49	28	15	7	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403011--403075	19	3.7	19	78	19	77	44	27	16	10	1.81
403065--403237	19	9.6	19	75	12	150	10	19	23	46	1.81
403065--403237	33	4.8	38	79	8	159	10	19	23	46	1.81
405148--405183	14	2.6	14	95	0	63	33	0	22	44	1.53
405290--405387	19	5.4	19	82	13	134	46	17	21	14	1.83
405294--405406	53	2.2	52	96	1	208	46	17	23	13	1.83
405402--405637	105	2.2	106	95	3	424	13	22	17	45	1.84
405472--405651	86	2.1	84	86	12	242	13	22	18	46	1.83
405402--405651	33	7.2	34	72	18	196	13	22	18	45	1.84
405402--405637	53	4.5	53	96	2	424	13	22	17	45	1.84
407930--407954	12	2.1	12	100	0	50	0	28	0	72	0.86
408129--408175	24	2.0	24	87	8	69	38	21	14	25	1.92
408876--409096	20	11.1	20	86	1	237	19	18	25	37	1.94
409064--409161	21	4.8	20	75	10	81	21	19	21	37	1.94
409064--409162	42	2.4	43	77	11	100	21	19	22	37	1.94
410050--410084	14	2.5	14	100	0	70	28	5	22	42	1.76
424268--424316	21	2.4	19	83	10	53	32	2	0	65	1.04
424568--424607	15	2.4	18	88	12	59	55	0	2	42	1.13
424654--424758	12	8.7	12	71	23	78	59	0	0	40	1.04
424605--424759	63	2.5	64	89	5	235	57	1	0	41	1.07
424656--424736	23	3.2	25	79	19	89	55	1	0	43	1.07
424622--424733	14	8.9	14	66	25	70	54	0	0	44	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424650--424763	21	5.4	21	73	18	87	59	0	0	39	1.03
426946--427111	84	2.0	84	92	0	278	26	18	29	25	1.98
427087--427134	21	2.3	21	82	7	62	20	25	31	22	1.98
427179--427363	84	2.2	84	87	5	259	27	15	29	28	1.96
427350--427455	33	3.2	33	94	0	176	22	8	44	24	1.80
427512--427747	117	2.0	117	83	6	300	24	10	32	32	1.89
427600--427663	33	1.9	33	93	0	110	25	3	39	32	1.71
427624--427872	84	3.0	84	84	9	328	22	15	32	30	1.95
427408--427829	201	2.1	201	85	1	560	24	12	32	30	1.92
427844--427889	21	2.2	21	92	0	74	17	26	28	28	1.98

Tables:   1   2   3   4